Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03348 ATGGAGTTGGATCCGATTCCGATCGGTTCGTGCTCCAAAGATCACCAGAGCATTTACCAACACTGGTTCAATCACGCTGATTCAGATGCGGATGGCCGCATAACCGGGAATGATGCCACCAGGTTTTTCGCCATGTCCAATTTGTCCCGTCAAGATCTTAAACAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGTTATCTAGGTCTCCAAGAGTTTATAATTGCTATGCAGCTAGTTTCTTTGGGACAATCTGGGCAACCAATAACACATGATCTGCTGAGTAGTGATGTTGATTTGAAAAATTTGAAACCTCCCATAATGGAGGGCTTGGATGTATTGCTAGCTAAGAAAAAGCATAAACAAAAAGAGATGGATGTAAATGGTAGTTCTCAATTACAGCCATCACTATCAAGTAATTGGTTTTCTTCGAAATCCACGAAAAAGGTTCCACTTTCCTCTGTGACATCAATAATTGATGGCTTGAAGAGACTCTACATCCAGAAGTTGAGGCCTTTAGAAGTTACTTACCGATTCAATGATTTTGTCTCGCCCTTATTGACAAATAGTGATTTTGATGCCAAACCTATGGTTATGCTTTTGGGTCAATACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAATGTAGTTATCCAGGTGCACATATTGGACCCGAGCCTACTACTGATAGGTTTGTTGTTGTCATGTCTGGTCCTGATGAGAGAAGCATTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCTTTTAGTGGACTCACAACTTTTGGCACAGCTTTTTTGTCAAAATTTGAGTGTTCGCAGATGCCTCATCCCCTACTGGAGCACATTACGTTTGTGGACAGTCCTGGAGTTCTATCTGGAGAAAAGCAACGAACGCAACGAGCATATGATTTTACGGGTGTAACATCTTGGTTTGCAGCCAAGTGTGATTTGATACTGCTTTTGTTTGATCCTCACAAACTTGATATTAGTGATGAGTTCAATCGCGTTATATCATCCTTAAGGGGACATGATGACAAAATTCGAGTGGTTTTAAACAAGGCAGATCAAGTTGATACTCAACAACTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTCGGGAAGGTGCTAAACACACCTGAAGTCATTCGTGTGTATATTGGCTCTTTTAACGACAAGCCTGTAAATGATGCTGTCAGTGGTCCAATCGGAAAGGAACTCTTTGAAAAAGAGCAGGAAGACCTTCTTTCAGATCTGAAAGATATACCCAAGGCGGCTTGTGATCGAAGAATCAACGAGTTTGTAAAACGAGCCCGAGCAGTTAAGATACATGCTTACATTATCAGTCATCTTAAAAAGGAGATGCCTGCAATGATAGGCAAAGGTAAAGCTCAGCAAAAACTAATTGATAACTTGGCAGGTGAATTTGGAAAGGTACAAAGGGAATTCCATTTGCCTCCTGGTGACTTTCCAAACGTTGAGCATTTCAGAGAGAGCTTGCGTGGTTATAATATTGACAAGTTTGAAAAACTGAAACCAAAAATGATACGAGTAGTTGATGACATGCTTGCCTATGACATTCCTAACCTCTTGAAAAATTTTAAGAATCCCTATGATTAA 1632 0.4075 MELDPIPIGSCSKDHQSIYQHWFNHADSDADGRITGNDATRFFAMSNLSRQDLKQVWAIADSKRQGYLGLQEFIIAMQLVSLGQSGQPITHDLLSSDVDLKNLKPPIMEGLDVLLAKKKHKQKEMDVNGSSQLQPSLSSNWFSSKSTKKVPLSSVTSIIDGLKRLYIQKLRPLEVTYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKCSYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDSPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVIRVYIGSFNDKPVNDAVSGPIGKELFEKEQEDLLSDLKDIPKAACDRRINEFVKRARAVKIHAYIISHLKKEMPAMIGKGKAQQKLIDNLAGEFGKVQREFHLPPGDFPNVEHFRESLRGYNIDKFEKLKPKMIRVVDDMLAYDIPNLLKNFKNPYD 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03348 543 FunFam EH domain-containing protein 1 198 426 - -
Vifa1g03348 543 Pfam N-terminal EH-domain containing protein 161 193 IPR031692 -
Vifa1g03348 543 Pfam Dynamin family 198 357 IPR045063 -
Vifa1g03348 543 SUPERFAMILY EF-hand 12 97 IPR011992 -
Vifa1g03348 543 PANTHER EH DOMAIN 17 540 - -
Vifa1g03348 543 CDD EH 19 85 IPR000261 GO:0005515
Vifa1g03348 543 ProSiteProfiles EH domain profile. 15 93 IPR000261 GO:0005515
Vifa1g03348 543 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 192 428 IPR030381 GO:0005525
Vifa1g03348 543 CDD EHD 197 441 - -
Vifa1g03348 543 Pfam Cytoskeletal-regulatory complex EF hand 26 80 IPR000261 GO:0005515
Vifa1g03348 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 464 IPR027417 -
Vifa1g03348 543 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Vifa1g03348 543 Pfam Domain of unknown function (DUF5600) 433 534 IPR040990 -
Vifa1g03348 543 Gene3D - 162 534 - -
Vifa1g03348 543 Gene3D - 10 107 - -
Vifa1g03348 543 Gene3D - 198 426 IPR027417 -
Vifa1g03348 543 SMART eh_3 8 103 IPR000261 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03348 Vifa-Chr1 522223689 522228963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03348 1 543 EF-hand Containing Proteins AT3G20290 82.936 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03348 K12483 - gmx:100804468 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03348 1 522223689 522228963 Vifa1g03348 1 522223689 522228963 ECH