Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03340 ATGAAGACCAGCAAAGTTGAAAAGAATGTGACATGGTCTTTGACACTATGTCTTGTCTTAATTTCTCTCATTACAATCTATTTTCCTTCTTGTGAATCCTTCAACTATGGCCAAGCCTTGTCACAAAGTCTCCTCTACTTTGAGTCACAACGTTCAGGTCACTTACCCTACAATCAAAGGGTCAATTGGCGTCACCATTCTGGTCTTAATGATGGCCTAGAACAAGGGGTTGACCTGGTGGGAGGCTACTATGATGCAGGGGACAATGTAAAATTTGGACTACCAATGGCTTTCACCGTAACTCTCCTTTCTTGGGCTGCCATAGAATATGGCGATAAAATCGCCAGTGCCGGCGAATATGGCCATACAATGGAGGCTATTAAATGGGGGACTGACTATTTCATCAAGGCTCACACACAACCAAATGTTTTATGGGTACAGGTGGGTGACGGAGAAACAGATCATTATTGTTGGCAGCGACCGGAGGATATGACAACGTCGCGAAGAGCTTATAAAGTTGACGAAAACAACCCCGGCTCTGAAGTTGCTGGCGAGACCGCGGCAGCCTTGGCAGCAGCATCAATTTTGTTTAGAAAAACAAATCCACATTACTCTCAACTACTCCTGTATCATGCACAAGAGTTGTTTGAGTTTGGTGACAAATTCAGAGGTAAATATGATGAGAGTGTTGAAGTGGTTAAAGGGTATTATACTTCAGTTAGTGGTTACATGGATGAGTTGTTATGGGCAGCACTATGGTTATATAAGGCTACAGAAAAAGAAGAATATTTAAAGTATGTTTTGGAAAATGCTTATGATTTTGGTGGAACTACTTGGGCCATGACAGAATTTAGTTGGGATGTTAAGTATGCTGGTGTTCAAGCCATTGCTTCAATGCTTCTTATGGAAGAAAAACACAAGAAACATGAAGTAATACTTGAACAATATCGTTCAAAAGTAAACCATTACATTTGTGCATGTCTTAACCTCAACAACGCAAGTAATGATAACGTGGATCGCACTCCAGGAGGGTTACTGTATATCCGTGAATGGAACAATATACAATACGTAGCAAATGCAGCGTTTCTTCTCACAATTTACTCAGATCACCTCTTGGCCACAAATCAAAAGCTACAATGTGGAAAAGGTGAAGTGAACCCTAATGAACTCTTTTCATTTGCAAAATCACAAGTTGATTATATATTGGGTTCTAATCCGATGAATATGAGCTATCTGGTTGGCTATGGTTCCAGATTCCCAGAGAGGGTGCATCACAGGGGTGCATCCATTGAATCATATAAAGAGAATATGGGTTTTATTGGATGCACTCAAGGATTTGATAATTGGTATGGAAATCCTATGCCCAACCCAAACATACTCATTGGTGCCCTTGTTGGTGGCCCTGATAAGAATGACCAATTTAGAGATGCAAGAGGAAATTACGAGCAATTAGAGGCTTGCACATACAATACTGCTGCACTTGTAGGGGTTTTTGCTAGATTATATCATTTTCAGTAA 1518 0.4065 MKTSKVEKNVTWSLTLCLVLISLITIYFPSCESFNYGQALSQSLLYFESQRSGHLPYNQRVNWRHHSGLNDGLEQGVDLVGGYYDAGDNVKFGLPMAFTVTLLSWAAIEYGDKIASAGEYGHTMEAIKWGTDYFIKAHTQPNVLWVQVGDGETDHYCWQRPEDMTTSRRAYKVDENNPGSEVAGETAAALAAASILFRKTNPHYSQLLLYHAQELFEFGDKFRGKYDESVEVVKGYYTSVSGYMDELLWAALWLYKATEKEEYLKYVLENAYDFGGTTWAMTEFSWDVKYAGVQAIASMLLMEEKHKKHEVILEQYRSKVNHYICACLNLNNASNDNVDRTPGGLLYIREWNNIQYVANAAFLLTIYSDHLLATNQKLQCGKGEVNPNELFSFAKSQVDYILGSNPMNMSYLVGYGSRFPERVHHRGASIESYKENMGFIGCTQGFDNWYGNPMPNPNILIGALVGGPDKNDQFRDARGNYEQLEACTYNTAALVGVFARLYHFQ 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03340 505 Gene3D - 32 504 IPR012341 GO:0005975
Vifa1g03340 505 PANTHER ENDO-1,4-BETA-GLUCANASE 16 501 - -
Vifa1g03340 505 Pfam Glycosyl hydrolase family 9 36 497 IPR001701 GO:0004553|GO:0005975
Vifa1g03340 505 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 400 426 IPR018221 -
Vifa1g03340 505 SUPERFAMILY Six-hairpin glycosidases 33 503 IPR008928 GO:0005975
Vifa1g03340 505 FunFam Endoglucanase 32 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03340 Vifa-Chr1 520366668 520371133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03340 16 500 Glycoside Hydrolase AT2G32990 70.468 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03340 - - gmx:100802346 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03340 1 520366668 520371133 Vifa1g03340 1 520366668 520371133 ECH