Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03310 ATGGAATCACCTACTTTTGTTTCAAAAGCGCGGACAGCCTTTCATTCCGCTGCGGCGAAAGCGGAACGTGTTCTTCTCGACTTCAAATCAGATCGAGATCAAGAGAAGCAATCTTCTGATAGCTTGACGAGGCAATCTCAAGTTGAATCTACAAGCGGCGAGAAAGAGAGTAAGGTTCACAGTGAAACTAAGCCTAAAAAGTGGAGACCTCCACATATAGGGATAAAACAAGATTGGCAAGATAAGTTTAAGAACATTCGGATAGGGAGAAAAGAAGAAGCTGAAGATACAGATAAAACTGGGGATGCAAACATGGCCATGCCATTTTATGATGAAAATTTGTATATCTTGAATGTTAAGAATGATCTCGAGGCAAAGGCTTCAGAAGCAATGCCATCTGTAGAAGGCCTAACTGCTGCGACTAAAGATCCCATTCCTCCATCCTCTGTGTTGAAGCAATTGTCTATAGCTGTCGAGGCTGGAAGTAAGGCAAAGTCCATGAAAGATTTTATAGCTTCATCGGGAAGTTCTTCACCTGCCAGAGAGAGGGTAGGCTTAAGTCTCTCTGCAGTTAAGGCTTTAGTGTTGCGAGAAAAGGAGGATAAACTTACCTCTGAGTTTAGTAGCGATGAGAAAGTTGTGCATTTGATCAACGCTATTTTTGATCCAGAGGGAGATTTCCTTAGAAGGAAGATCAATTCCAGTTCAGAGGAAAATGACATACCATCTTTGCCAAGAGATATTCACGGTGCTCCTCCTGAAAGTCTTGTCGTAAAGTTGGCTGAAGTTATTGGAAACTACAAGACCCTCCGAAAAATGGCTCTTTTCTGGTGCAGGGTTGTTGCTGAACTGAGAAAATTTTGGTCTGAAGAACAATATTTACCTGGAGTCCCCCAGAACGAGATTCCAGATCTGAAAACATGTCTTCTGTATCAACAATTTCAAGTAATTAATTGTTGTATTTCTCGGAAGAGGCTCCGTATCATTGCTACTGAATCTCTAGAATCTATGATGATGCAAGCTAGTTCAGACATTAAAGAATCAGCCAATGATGATGATGGAGCTCCTGCAGGCCCTATTTTATATGCTAAAATAAATACCGGGGAGCGTGTTCTCCGACTTGGTGCTGATTGCCGGTCTGGTGATTTGACATTGTTGGAAACTGGCGAGCCCGTGTACTCTCCTGTCACCCAGGAAGGACCTTTGCTTACAGAAGATTTAATCAGAGAAACAGAGGAGTTTGTGCTGCGGACTGGGAGTGTTGGGGCTGGCTGCTCACAACTTCTCTCAGATATGCAGGCTTTCAAGGCAGCGAATCCTGGATGTATTTTGGAGGATTTTGTAAGATGGCACTCACCTCCTGACTGGACAGACAACGAGGCTAGTATTGAGGATAGTGATGTTTTTGACAGTGGTGAGTCATTGTCGATCAGAGGCCAGTTAAGTCGGCGTATGCAAAAAGAAGGTAATTTGTGGCGTGAATTGTGGCTAACATCTAAACCAGTACCAGCTGTTAAACAGGCGCCTCTCTTCGACGAGGATTTGGCAGTAGAGGGCATCCTCAATGCATTTGAAGACATCCATCCTGTAGAGCTTTTTGGACAGTTGTTTGTCTCTTTACTTGGGTTAGGATTTGCAATTGCTGAACCTATGCTGTCTAGTAGCAAGGATTTCTCAAAGTTGTTCTGTGACTGCAAGGAGTACATAATTGCTACTTGCCAAAACAACAAATGGAATGAAAAAGTTGATGACCTTGTCCAGGTATATGACACAGTGGAGACAATGTTACTGAATCCTGAAGAAGCATTGAAGATGATGAAACAGACAGAAGAATCAACTACAGTTACTGATGAACCAAAGAGCCGGTTAAAGCGGCTTAGCCTTGTCTTCAGCAGCAAAGATAAAGTATCGAAGAAAATCCCATCAAAAGATCAAACAAACGATGAAGAGAAGTCAGCGCGGCAATCTTTCTCAAGTTTCTTTGAAAACAAGTCATCTTTATTTTCAAAGAAGCCTCCTAGGTCTGGATGCCCGTCTCCTTCCGAGAAACCTCCTCTCGAAACTGATTGGACAATTGTGTGA 2082 0.4284 MESPTFVSKARTAFHSAAAKAERVLLDFKSDRDQEKQSSDSLTRQSQVESTSGEKESKVHSETKPKKWRPPHIGIKQDWQDKFKNIRIGRKEEAEDTDKTGDANMAMPFYDENLYILNVKNDLEAKASEAMPSVEGLTAATKDPIPPSSVLKQLSIAVEAGSKAKSMKDFIASSGSSSPARERVGLSLSAVKALVLREKEDKLTSEFSSDEKVVHLINAIFDPEGDFLRRKINSSSEENDIPSLPRDIHGAPPESLVVKLAEVIGNYKTLRKMALFWCRVVAELRKFWSEEQYLPGVPQNEIPDLKTCLLYQQFQVINCCISRKRLRIIATESLESMMMQASSDIKESANDDDGAPAGPILYAKINTGERVLRLGADCRSGDLTLLETGEPVYSPVTQEGPLLTEDLIRETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTDNEASIEDSDVFDSGESLSIRGQLSRRMQKEGNLWRELWLTSKPVPAVKQAPLFDEDLAVEGILNAFEDIHPVELFGQLFVSLLGLGFAIAEPMLSSSKDFSKLFCDCKEYIIATCQNNKWNEKVDDLVQVYDTVETMLLNPEEALKMMKQTEESTTVTDEPKSRLKRLSLVFSSKDKVSKKIPSKDQTNDEEKSARQSFSSFFENKSSLFSKKPPRSGCPSPSEKPPLETDWTIV 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03310 693 MobiDBLite consensus disorder prediction 636 651 - -
Vifa1g03310 693 Pfam Rab3 GTPase-activating protein catalytic subunit 372 525 IPR026147 -
Vifa1g03310 693 MobiDBLite consensus disorder prediction 636 693 - -
Vifa1g03310 693 MobiDBLite consensus disorder prediction 652 672 - -
Vifa1g03310 693 MobiDBLite consensus disorder prediction 29 75 - -
Vifa1g03310 693 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 16 678 IPR045700 GO:0005096|GO:0043547
Vifa1g03310 693 MobiDBLite consensus disorder prediction 51 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03310 Vifa-Chr1 515334703 515340804 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03310 K18270 - gmx:100818643 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03310 1 515334703 515340804 Vifa1g03310 1 515334703 515340804 ECH
Vifa1g03310 1 515334703 515340804 Vifa1g03310 1 515334703 515340804 PCT