Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03303 ATGACAACTCACTCTCTACTCTTCTATGCTCTCATTCTACTTGCTTCCACTTTCTCTCTCCATTTTCAAGCTCACGCTGCTCCTGCAGGTCCATTGATTAAGCATTTGTCTTCACTTATCAGATGGACAAGGTCTGCCTCCAAGATGCCACAATCAGATGGGAATGTTCTTCAATTTGAGAATGGTTATGTAGTCGAGACTGTTGTGGAAGGAAATGAGATTGGAGTTATCCCTCATCGGATCCGCGTCTCTGAAGAAGACGGTGAACTTTTTGCTGTTGATGAAATTAATAGCAACATTGTTCGAATTACCCCGCCACTGTCTCAATATAGTAGGGGAAGATTGGTAGCTGGGTCGTTTCAGGGCTACACTGATCACGTTGATGGAAAACCTAGTGATGCTCGGTTTAATCATCCCAAAGGAATTACTATGGATGATAAAGGGAATGTTTATGTTGCTGATACTCAGAATCTTGCTATTAGAAAGATCGGAGATGCTGGCGTCACAACCATTGCTGGAGGAAAGTCCAACGTTGCTGGCTACAGGGACGGGCCTAGTGAGGATGCTAAGTTCTCAAATGATTTCGATGTGGTATATGTTCGGCCAACCTGTTCCTTGTTGGTCATTGATAGAGGGAATGCTGCTCTTCGACAAATTATTCTTGACCAGGACGACTGTGATTACCAATCTAGTTCAATTTCCAGCACAGATATCCTTACAGTTGTTGGTGCTGTTTTGGTTGGATATGCTACATGCATGCTTCAGCAGGGGTTTGGATCCTCTTTCTTCTTAAAAACAAGACACTCGAGAGGAGAGTTTAAAGGGCAACCAAGCAACGAGAAGCACATGCCAATCCCGGACAGTGGTAAAGAAGATCCCGGATGGCCATCTTTTGGACAACTTATTGCCGATCTTTCTAAGCTATCCTTTGAAGCAATGGCTAGTACATTCACTCAATTCATACCCTCGCATTTCAAATCTAACAGCGTGAATAGAGGACTAACACCGCTTAAGGATCGTCTTGTGATGCCTGAAGACGAAGTCAAGCCTCCATTAGTCAATAGAAAAGCCACACATGTTACTCATACCGAAAATCGGCAGATGCCACAGGTCCATACTCCAAGCACTGCTGAGAAATATTCAGAAGTAAAGCCTCCAAAGATAAAATCAAGCAGTTTCAAGGATCCTTCATTGTCAAGTAAGCACCTATCTTCAAAACGACCTGAGTATGCTGAGTTCTACGGATCTAGTGAGTTTCCGTCACATGTGAAATCTAAAAGCCAAAAAGAAAGGACAAGGCATCGACACCGAGAAAAGAGTGGAGAAGTTGGTTCTGCGACAAATGGAGCTGTGTCTAAACCTGTTGAAACAAGGGGGGCTGTTGATCGTAGCAATTCGAAGTTTGACCATTATAGTATGAGGACTAATTATGTTCCTGGAGAGTCATTCCGATTCAATTCTCAGTAA 1467 0.4329 MTTHSLLFYALILLASTFSLHFQAHAAPAGPLIKHLSSLIRWTRSASKMPQSDGNVLQFENGYVVETVVEGNEIGVIPHRIRVSEEDGELFAVDEINSNIVRITPPLSQYSRGRLVAGSFQGYTDHVDGKPSDARFNHPKGITMDDKGNVYVADTQNLAIRKIGDAGVTTIAGGKSNVAGYRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQIILDQDDCDYQSSSISSTDILTVVGAVLVGYATCMLQQGFGSSFFLKTRHSRGEFKGQPSNEKHMPIPDSGKEDPGWPSFGQLIADLSKLSFEAMASTFTQFIPSHFKSNSVNRGLTPLKDRLVMPEDEVKPPLVNRKATHVTHTENRQMPQVHTPSTAEKYSEVKPPKIKSSSFKDPSLSSKHLSSKRPEYAEFYGSSEFPSHVKSKSQKERTRHRHREKSGEVGSATNGAVSKPVETRGAVDRSNSKFDHYSMRTNYVPGESFRFNSQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03303 488 SUPERFAMILY NHL repeat 60 171 - -
Vifa1g03303 488 MobiDBLite consensus disorder prediction 363 377 - -
Vifa1g03303 488 Gene3D - 41 220 IPR011042 -
Vifa1g03303 488 MobiDBLite consensus disorder prediction 355 467 - -
Vifa1g03303 488 Pfam NHL repeat 136 162 IPR001258 GO:0005515
Vifa1g03303 488 PANTHER - 29 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03303 Vifa-Chr1 514591346 514594807 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03303 - - gmx:100797841 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03303 1 514591346 514594807 Vifa1g03303 1 514591346 514594807 ECH