Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03301 ATGGAGGAGGACATGGATGAGATCGACGACGTTCCTCAGGTTTACATGGCCTGCATACAAAATGGTAATAGAATAGGAGTTTCTTATTATGATTCCAGTCTTCGACAACTTAATGTGCTTGAAGCTTGGGATGATGGGGACAAAGGTTTTTCAGTTATTGATCTCGTGAAATATCAAGCAAGCCCTCTCGTCATATACACAAGCACTAAATGTGATGAATCTTTCTTGGCTGCTCTGCAACTAAGTGATGAAGCAGCTGAGGCTCCTACAGTAAAGCTTGTCAAAAGTTCAATATTCAGCTATGAGCAAGCATGGCACAGATTAATTTACCTCCGGGTGGCGGGAATGGATGATGGATTAGACGTCAAGGAAAGGATTTACTTTCTGAGCTCCATGATGGACATGGGAAGTGAAGTACAAGTTCGTGCTAGTGGTGGCCTTCTTGCAATACTAGAGAATGAAAGGATTGTAGATACTCTTGAGCAAAAAGAATCTGGAAATACATCAATTACAATAGATTCTTTAGCAGAAATTTCACTAAATAACTTTATCAAACTTGATGCAGCAGCTCATGAAGCATTACAAATATTCCAAATAGACAAGCACCCAAGCCACATGGGAATTGGTAGAGCAAAAGAAGGGTTTTCTGTATTTGGAATGATGAATAAGTGTGTCACTTCAATGGGTAGACGTCTTTTGAGACAGTGGTTCTTGAGGCCCATACTTGATCTTGAAGTTCTAAACTACCGATTAAATTCTATATCTTTCTTTCGATGCTCAGAAGAACTCGTTACTTCTCTACGTGAAACCCTGAAATCTGTGAAGGACATTCCCCACTTGCTGAAGAAATTTGACTCTCCAAGCTCCATATGCACTAGCACTGATTGGGCAGCACTTCTGAAGAGTATCAGTGCGCTATTGCATGTAAACAAGATATTTGAAGTTGGAATTTCCGAAGGTCTTCAAGAAGAATTGAAGTACTTGAATTTGGATATTGTTGAGAAGGCAAGTTCATGCATAACAACGGAGCTTGCTTATGTCTATGAACTGATAATCGGGGTTATTGATGTAAATAGAACTAAAGAGAAGGGATATATGACAGTGGTGAAAGAAGGCTTCTGTGATGAGTTGGATGAGCTAAGGCAAATATATGAGGAACTGCCAGAATTCCTAGAAGAGGTTTCATCATTGGAGCTTGCACAACTCCCCGATCTATGCAAAGACAAATTTGTTCCCTGTATTGCTTATATAGCGCAAATAGGATATTTAATGTGCATCTTTGAAGAAAAACTGGAAGAAGCCACTCTGGAGAAACTTATAGAATGGGAATACATTTTTTGTGATGAAGATGAAGAGACAAAAAAATACTTTTATCGCACGCCAAAGACACAAGAGTTGGACAATCTTCTGGGAGATATCTATCATAAAATTCAAGATATGGAGCGGGCGATAACCCGAGACTTGTTTTCACATGTAATATCGTTCTCAACCCATTTGATAAAGGTTTCAACCTTTGCTGCTGAACTGGACTGCTTTTTGTCAATGGCCTTGGTTGCTCGACAAAACAATTACGTCAGACCTTTATTGACTGAAGAAAACTGGCTCGATATAAAAAATGGAAGGCACGTTTTACAGGAAATGACTGTAGACACGTTTATTCCTAACGATACTAAGATATTTCATGATGGAAGAGTCAACATCATTACTGGTCCTAACTTTTCTGGGAAGAGTATCTATATAAAACAGGTGGCTGTAATTGTTTTCCTGTCCCACATCGGTAGTTTTGTGCCAGCTGATGCAGCAACTGTTGGGCTGACAGATAGAATATTTTGTGCAATGGGAAGCAGGCTTATGACAGCAGAGCAATCTACATTTATGATTGATCTACATCAAATTGGGATGATGCTAAGGAATGCTACTTCCCGATCTCTCTGTCTGGTGGATGAATTTGGTAAAGGTACTCTTACAGAAGACGGCACCGGTCTACTTGCTGGGGCCATAAATCACTTTATCACATGTGATGAGCCTCCAAAGGTTTTCATATGCACCCATCTGATGGATTTATTGCATGGGTGTTCTTTAACCAAGTCGGAGCAGATCAAGTTCTACACAATGAGTATGCTAAGGCCCGAAGTCAATTTAACTCAAATGGAAGACATCATTTTTTTATATAGGCTTGTCCCTGGGCATGTGCATCATAGCTATGGGCTGCACTGTGCACTGCTTGCTGGTGTGCCAGACAAAATTATTAAAAGAGCAGCAGTTGTATTGGATGCGGTTTCAAAAAACAATTGTATTGAGAGGTTATGCGATGAGAACATCTCTGCTCAAGATGATGAGTATAAGGATGCCATGGATAAATTGTTGAAATTCGCCATTGACAGAGGCGACTTAAACCTGTTTTTTGAGGAGATATTCTCCGGGGTACCTAATGCATCATGA 2442 0.4001 MEEDMDEIDDVPQVYMACIQNGNRIGVSYYDSSLRQLNVLEAWDDGDKGFSVIDLVKYQASPLVIYTSTKCDESFLAALQLSDEAAEAPTVKLVKSSIFSYEQAWHRLIYLRVAGMDDGLDVKERIYFLSSMMDMGSEVQVRASGGLLAILENERIVDTLEQKESGNTSITIDSLAEISLNNFIKLDAAAHEALQIFQIDKHPSHMGIGRAKEGFSVFGMMNKCVTSMGRRLLRQWFLRPILDLEVLNYRLNSISFFRCSEELVTSLRETLKSVKDIPHLLKKFDSPSSICTSTDWAALLKSISALLHVNKIFEVGISEGLQEELKYLNLDIVEKASSCITTELAYVYELIIGVIDVNRTKEKGYMTVVKEGFCDELDELRQIYEELPEFLEEVSSLELAQLPDLCKDKFVPCIAYIAQIGYLMCIFEEKLEEATLEKLIEWEYIFCDEDEETKKYFYRTPKTQELDNLLGDIYHKIQDMERAITRDLFSHVISFSTHLIKVSTFAAELDCFLSMALVARQNNYVRPLLTEENWLDIKNGRHVLQEMTVDTFIPNDTKIFHDGRVNIITGPNFSGKSIYIKQVAVIVFLSHIGSFVPADAATVGLTDRIFCAMGSRLMTAEQSTFMIDLHQIGMMLRNATSRSLCLVDEFGKGTLTEDGTGLLAGAINHFITCDEPPKVFICTHLMDLLHGCSLTKSEQIKFYTMSMLRPEVNLTQMEDIIFLYRLVPGHVHHSYGLHCALLAGVPDKIIKRAAVVLDAVSKNNCIERLCDENISAQDDEYKDAMDKLLKFAIDRGDLNLFFEEIFSGVPNAS 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03301 813 Gene3D - 417 524 - -
Vifa1g03301 813 Gene3D - 185 416 - -
Vifa1g03301 813 FunFam DNA mismatch repair protein MSH5 525 791 - -
Vifa1g03301 813 Pfam MutS domain V 567 758 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vifa1g03301 813 Pfam MutS family domain IV 372 473 IPR007861 GO:0005524|GO:0006298|GO:0030983
Vifa1g03301 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 524 760 IPR027417 -
Vifa1g03301 813 Pfam MutS domain III 191 516 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vifa1g03301 813 CDD ABC_MSH5_euk 536 745 - -
Vifa1g03301 813 FunFam DNA mismatch repair protein MSH5 184 410 - -
Vifa1g03301 813 SMART mutATP5 563 758 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vifa1g03301 813 PIRSF MSH2 1 798 IPR011184 GO:0005524|GO:0006298|GO:0030983
Vifa1g03301 813 SMART DNAend 212 548 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vifa1g03301 813 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 72 772 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vifa1g03301 813 ProSitePatterns DNA mismatch repair proteins mutS family signature. 643 659 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vifa1g03301 813 Gene3D - 525 794 IPR027417 -
Vifa1g03301 813 SUPERFAMILY DNA repair protein MutS, domain III 187 523 IPR036187 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03301 K08741 - gmx:100797567 1408.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03301 1 514261175 514289704 Vifa1g03301 1 514261175 514289704 ECH