Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03238 ATGGAACTCAATTTCATTCTTATTATTATCATTCCAATTCTTCTTTCTGCAACCATAACTGCTGAATACGTTCGCCCTTTGCCTCGAAACACCTTAAACATTCCATTCCCATGGGGTTCCAAATCCAATCCTCCTTCTTACCCTCAACAGGTACACATTTCTTTGGCAGGAGACAAGTACATGAGAATAACATGGATAACTGATGACAAACATTCACCTTCATTTGTAGAATATGGAACATTAGCCGGTAGATATGATTCAATAGCTGAAGGAGAGTTCACTTCTTATAGTTATCTGTTATATAGCTCAGGAAAGATACACCATACTATAATTGGACCTTTGGAATACGGTACTGTGTATTTCTACCGATGTGGTGGACAAGGTCCTGAGTTCGAACTGAAAACTCCTCCAGCGGTGATCTTTCGTATGCTGATTGTATGCAACATCTTTGGGACTCGTTTGGAGAATATATTATTGTTAACAGATGAATTTGTGTCGTATAATTCGAGATGGAAAATGCCATTTGAGGAAAGTGGATCATCTTCAAATCTTTATTATTCTTTTGAAGTTGCAGGTGTTCATGTTATTATGCTTGGGTCTTATGCAGACTATGGTGTGTACTCGGAACAATACCGATGGCTAAAGGAAGATCTGTCGAAGGTGGACCGGAAAAGAACACCTTGGCTGCTTGTGTTATTTCATGTGCCGTGGTATAATAGCAACAAAGCTCATCAGGGTGCAGGGGATGATATGATGGCAGCCATGGAGCCATTGCTTTATGCTGCTAATGTTGATCTAGTTCTCGCTGGTCACGTTCATGCTTACGAACGTTCGAAACGCGTGTATAATGGAAGATTGGATCCTTGTGGCGCTGTTCATATAACTATTGGTGATGGCGGAAACAGAGAAGGCTTAGCTCATAGATACATAAATCCACAGCCAAAGTGGTCAGAATTCCGCGAAGCGAGTTTTGGTCATGGCGAGCTGAAGATTGTAAACTCAACTCATGCGTTCTGGAGTTGGCATAGGAATGATAATGATGAGTCAGTTAAGGCTGATGATATCTGGATAACCTCGTTGATAAGGTCGGGATGTGTTGATCAGAACAGACACGAGCTCAGGAGTATGCTTGGAACACCCTAA 1143 0.4147 MELNFILIIIIPILLSATITAEYVRPLPRNTLNIPFPWGSKSNPPSYPQQVHISLAGDKYMRITWITDDKHSPSFVEYGTLAGRYDSIAEGEFTSYSYLLYSSGKIHHTIIGPLEYGTVYFYRCGGQGPEFELKTPPAVIFRMLIVCNIFGTRLENILLLTDEFVSYNSRWKMPFEESGSSSNLYYSFEVAGVHVIMLGSYADYGVYSEQYRWLKEDLSKVDRKRTPWLLVLFHVPWYNSNKAHQGAGDDMMAAMEPLLYAANVDLVLAGHVHAYERSKRVYNGRLDPCGAVHITIGDGGNREGLAHRYINPQPKWSEFREASFGHGELKIVNSTHAFWSWHRNDNDESVKADDIWITSLIRSGCVDQNRHELRSMLGTP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03238 380 Pfam Calcineurin-like phosphoesterase 166 275 IPR004843 GO:0016787
Vifa1g03238 380 Pfam Purple acid Phosphatase, N-terminal domain 48 128 IPR015914 GO:0003993|GO:0046872
Vifa1g03238 380 SUPERFAMILY Purple acid phosphatase, N-terminal domain 36 137 IPR008963 GO:0003993|GO:0046872
Vifa1g03238 380 Gene3D - 47 138 - -
Vifa1g03238 380 Gene3D - 154 367 IPR029052 -
Vifa1g03238 380 CDD MPP_PAPs 173 359 IPR041792 -
Vifa1g03238 380 Pfam Iron/zinc purple acid phosphatase-like protein C 291 349 IPR025733 -
Vifa1g03238 380 PANTHER ACID PHOSPHATASE RELATED 162 358 IPR039331 GO:0003993
Vifa1g03238 380 SUPERFAMILY Metallo-dependent phosphatases 161 358 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03238 Vifa-Chr1 506320513 506323901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03238 165 370 Miscellaneous Gene Families AT2G03450 30.870 3.93e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03238 K22390 - gmx:100787977 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03238 1 506320513 506323901 Vifa1g03238 1 506320513 506323901 ECH