Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02979 ATGGCAGCTGCTACCACTAGCTTTGGAACTGCCTGGTGTCTAAGAAGAGCAACTCACGCTTTCGCACTTTCTCATCTCCGCACCAATGTCAACCTCTCTTTTCCAAGCACCCTCACCTCTCACCTTCTCTCCCTTTCCACTCCTTCAGATTCAAGTGCAAGCCAAGCAGTACAAGCTTCAAAAGGTGAAGTTGATGTACTGCTCAAGGGAGTTGGGGAGAAAAGTGTAGCTAATGAAGTGAAGCATGTTCTTGAGATGGCTAGACGAGCATCCTTAAAACGAGAGATTCTCCACACAAAGTTTCTAACCCCTCCAGTGCTGAAGGAATCTATGCAAGTATTGGAAAAATTAGCCGACGTTAAAGCATTGGTGCAAGGAGGTTATCCACAAGCCGAGCGATGCCGGATTTCTGTTGGACATCCAGATGAACTGACAAGTGATCCAGATGTTATTTCGGCATTGAGCATTACGGGGAACTTCCAGTTTGAACCTTGCTCTCATGGTGACTTCCTTGGTTCAATTCTTGGTACAGGAATTGCTAGGGAGAAACTGGGAGATATTATATTGCAGGGGGAACAGGGTGCTCAGATAATTGTTGTACCAGAACTAGTTGAATTTCTTATGACAGCACTGGATAAGGTTCGAAATGTTCCTGTAACCTGCACCAAGATACCATTAATTTCTCTTGATTATGAATCACCAAGAACGAAATCATTCAAAACTATAGAAGCATCACTAAGAGTTGATGCAGTAGCTAGTGCAGGATTTAAGATTTCACGTTCAAAGCTAGTTGACATGATCAGCAATGGAGATGTACGTATCAACTGGATCCCAATTACTACCAAAGGAACAACAATCAAGAGTGGAGATCTTGTATCAGTTAGTGGAATGGGAAGATTAAAGATAGGAGAAGTTAACACCACAAAGAAAGGAAAGTTTGCAGTGGAGCTCATTCGATATTTGTAG 966 0.4286 MAAATTSFGTAWCLRRATHAFALSHLRTNVNLSFPSTLTSHLLSLSTPSDSSASQAVQASKGEVDVLLKGVGEKSVANEVKHVLEMARRASLKREILHTKFLTPPVLKESMQVLEKLADVKALVQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGSILGTGIAREKLGDIILQGEQGAQIIVVPELVEFLMTALDKVRNVPVTCTKIPLISLDYESPRTKSFKTIEASLRVDAVASAGFKISRSKLVDMISNGDVRINWIPITTKGTTIKSGDLVSVSGMGRLKIGEVNTTKKGKFAVELIRYL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02979 321 Gene3D - 147 229 IPR012677 -
Vifa1g02979 321 Gene3D - 73 140 - -
Vifa1g02979 321 SMART s4_6 246 308 IPR002942 GO:0003723
Vifa1g02979 321 ProSiteProfiles S4 RNA-binding domain profile. 246 312 - -
Vifa1g02979 321 SUPERFAMILY Alpha-L RNA-binding motif 105 308 - -
Vifa1g02979 321 Pfam S4 domain 247 292 IPR002942 GO:0003723
Vifa1g02979 321 NCBIfam photosystem II S4 domain protein 76 319 IPR017506 -
Vifa1g02979 321 Gene3D - 240 296 IPR036986 GO:0003723
Vifa1g02979 321 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 76 262 - -
Vifa1g02979 321 FunFam BnaA05g14690D protein 240 297 - -
Vifa1g02979 321 Pfam Putative RNA-binding domain in YlmH 152 226 IPR040591 -
Vifa1g02979 321 CDD S4 247 296 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02979 - - gmx:100793767 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02979 1 465338661 465341735 Vifa1g02979 1 465338661 465341735 ECH