Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02920 ATGAGGGCTTCTTTGGGTGCTGTAATTGGGAGACACCCATCAAGTGATGGAACAATCCACATGGGTGGAAATGGGATCATAAAGCATAACAGGAAATGCAGAGACATAGCTGTTCTTGTCATCTTCATTGCATTCTGGGTTGCCTTGATTGTTAACTCTAGCTTTGCTTTCAACAAAGGAAACCCATTAAGGCTTACTTTTGGGCTAGACTACAAAGGAAATGTGTGTGGGGATAAGCATGCAGGACTTCATGAGTTGGAACTCAAATACTGGCTAAACCCTAATCAGGTTTATCAAAGTGGATTGAAGGATAGTCAGTTTAAGCTGTCCGATGCTCGCAGTATATGCTTGTTGGACTGTCCTATTCCGTCTGAAGAGTCACTTACTTGGGTTTGTGATTATCCTGAAGGAGATATTCGTGTTTCAATGAATGATTGGATTGATATGAACTATGATTATTATGAGTTGCTCACGCCAGAAATGAAAAACTCGTCTGTTCAACTTCAAGGGCCTTGCTATCCTGTCATATTTCCTAGTGTAAATGTTTACTGGAGTTGCCAATTCATTGCTAGAGCATCCAATGTGTCTTTAAAGCATTGGCAGCAGATGGGTGGAGTTAACATCAATGAAGATACTGTCATTGATAAGTCCATTCACAAGTATATCAATTCTCACTCAGCTATCTTAAAGAGATACATGGCCGACATAGGAAAGACTTGGCCTGTGCTGATTGTTTGTGGTGGGATTTTACCTTTGTTTCTCTCTGTGATTTGGCTGCTGATGATCCGGCATTTTGTTTCTGCAATGCCTTGGATAACGGTTGTTTTCTTTGATCTTCTAATAGTATCAGTTACAATGTTCTACTACCTAAAAGTTGGATGGATAGGAAATGACACTATAACACCCATCATTGGGGAGCATGATCCTTACATTCATATATATGGAAGGGAGCTGACTCATCTCCGTGTTGTCACTATCCTCATGACTTTTATAATGGTTGTTTCCGTTCTTACATCAATCGCTATTATTCGGCGCATCCTTATGGCAACTTCAGTTCTTAAGGTTGCAGCAAAAGTTATAGGAGAAGCTCAAGCACTTATTGTTTTCCCAGTCATACCATATAGTATCCTTGCAGTGTTCTACATGTTATGGATTTCGGTTTTTCTCCATTTATTCAGCTCTGGTCAGGTTGTTCAGAATGACTGCCACTCTAACTGCTGTTCATATAACCTCATGGAAAAGAGGGTAATCTGCGATCGCTGTTGCGGATATAGCATCCATTGCACACCACACATTGGAGTTGCTATCCTCTTTCATCTGTTTGGTTGTTATTGGGTTACACAATTTCTCATATCATGCTCATCAACGGTGATTGCCGGATCTGTCGCCTCTTATTATTGGGGCCGTGGTGAAACATCGCCAGAAATTCCTTTTATTTCCGTCTTTTCCTCCATGAAGAGGCTTATTCGTTACAGTCTCGGTTCTCTGGCTCTTGGCTCCTTGACTGTTTCATTTGTAGAATCAATCCGCTTCCTGCTCGAATCTATTCGCCGCAAACTGAAAGTCTCCGGCCACGAGCCTGACAACTGGTTCGGGAAGGCTGCATACCAGTCATCTCGATTTTTTCTAATGTGTATTGAATGGACCATAAAATCATTCAACCGAAATGCTTATATCATGATTGCTATAACCGGTAAAAGTTTCTTTAGCGCTTCATCTATTGCAACAAATTTGATTAAGAATAACATCTTACGGATTGGGCGTGTCAATGTGATCGGAGACGTTATCTTATTCCTCGGAAAACTATGTGTCAGCCTCTGGAGTGCTGCTTGTGCTTTCCTCATGTTAGACACTCACAAATACAAATCCGCGCATAACAAGATTTCATCTCCGTTCTTTCCTGTTATGGTTTGCTGGGCTCTTGGGTATATTGTTGCGACACTTTTCTTTGGAGTTATCGAAATGTCGATTGACACCATCATTCTCTCATTCTGTCAGGATTCTGAAGAGCATGGAACAGCACAATATGCTCCTCCTCTTCTCATTGAAACTCTCAGTGACCAAAATGAGATGCAAAGACTTGCAGAAGAATCCCGTTAA 2100 0.4124 MRASLGAVIGRHPSSDGTIHMGGNGIIKHNRKCRDIAVLVIFIAFWVALIVNSSFAFNKGNPLRLTFGLDYKGNVCGDKHAGLHELELKYWLNPNQVYQSGLKDSQFKLSDARSICLLDCPIPSEESLTWVCDYPEGDIRVSMNDWIDMNYDYYELLTPEMKNSSVQLQGPCYPVIFPSVNVYWSCQFIARASNVSLKHWQQMGGVNINEDTVIDKSIHKYINSHSAILKRYMADIGKTWPVLIVCGGILPLFLSVIWLLMIRHFVSAMPWITVVFFDLLIVSVTMFYYLKVGWIGNDTITPIIGEHDPYIHIYGRELTHLRVVTILMTFIMVVSVLTSIAIIRRILMATSVLKVAAKVIGEAQALIVFPVIPYSILAVFYMLWISVFLHLFSSGQVVQNDCHSNCCSYNLMEKRVICDRCCGYSIHCTPHIGVAILFHLFGCYWVTQFLISCSSTVIAGSVASYYWGRGETSPEIPFISVFSSMKRLIRYSLGSLALGSLTVSFVESIRFLLESIRRKLKVSGHEPDNWFGKAAYQSSRFFLMCIEWTIKSFNRNAYIMIAITGKSFFSASSIATNLIKNNILRIGRVNVIGDVILFLGKLCVSLWSAACAFLMLDTHKYKSAHNKISSPFFPVMVCWALGYIVATLFFGVIEMSIDTIILSFCQDSEEHGTAQYAPPLLIETLSDQNEMQRLAEESR 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02920 699 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 23 693 IPR007603 GO:0022857|GO:0055085
Vifa1g02920 699 Pfam Plasma-membrane choline transporter 326 669 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02920 Vifa-Chr1 454781642 454784953 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02920 K15377 - gmx:100789185 1224.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02920 1 454781642 454784953 Vifa1g02920 1 454781642 454784953 ECH