Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02898 ATGGACCGCCTTCTCAAAGCCGCCAGAGGTTCCGGTTCTCTCAACCTCTCCAACCGCTCCCTCAGTGAAGTACCCGATGAGGTTTATCGGAATCTTGAAGGCGTCGGTGGAACTGATGATAAGTGGTGGGAGGCTGTGGAGCTTCAGAAACTCATTTTAGCTCACAATAGTATTGAGTTGTTAAAGGATGATATCAGAAATTTAGGTTTTCTTATTGTGTTGAATCTTAGCCACAATAGTCTTTCTCAACTGCCTGCCGCCATAGGAGAGCTACCTCAGTTGAAGATGTTGGATGTTTCGCACAATTCGTTGGTTAGTATGCCGGAGGAGATTGGATCAGCTGCGTCACTTGTGAAATTTGATTGTTCAAATAATCAGCTCAAAGAACTTCCTAGCTCACTCGGAAGATGTTTGGAGTTGTCGGACTTAAAGGGATCAAACAATCTTATTGCAAGCTTGCCAGAAGATTTAGCAAATTGTTCCAAAATGTCTAAGCTAGATATGGAGGGAAACAAGCTTACAGTGATATCCGAAAATATCATTTCATCATGGACAATGCTTACTGAATTAAATGCCGCAAAAAATTTGCTGAATGGCATACCAGCCGGGATTGGAGGCCTTTCACGTTTAATCCGTCTTGATCTCCATCAGAACAGAATTTCATCAATCCCTTCATCAATCATTGGTTGTCATTCACTTACAGAGTTTTATTTGGGGAATAATAATATTTCTACAGTACCAGTGGAAATAGGGGAACTTTCTCGGCTTGGGACATTAGATCTACACTCTAACCAGCTGAAAGAGTATCCCGTGGAGGCATGCAAATTGAGTCTTTTAGTCTTGAATCTTTCAAATAATTCACTGAGTGGGTTACCTCCTGAAATGGGCAAGATGACTAGCTTGAGGAAACTTCTGCTTAGTGGAAACCCATTGCGGACTCTTCGAAGCTCATTAGTCACTGGACCTACACCAGCGTTACTAAGATTTCTCCGAAGTAGACTTTCTGAAGATTCTGAAGATATAACCACATCAAAAAAAGACATAATTGCAATGGCTACTCGATTATCTATCACTTCAAAGGAATTTTCTATGGGAGGACTGGGGTTGAGTGCTATTCCATCAGAAGTATGGGAATCAGAGGAGGTCATAAAACTTGATCTTTCCAAAAACTCAATCCAGGAATTGCCAGTTGAACTTTCTTCTTGTGTTTCTCTCCAGACATTGATTTTATCGAAGAATCAAATTAAAGACTGGCCAGGTTCAATTCTTCAATCACTTTCGAGTCTATCTTGTTTGAAGCTGGACTACAACCCCCTCAGACAGATACCTTCAAATGGTTTTGAAGTGTTGCCTAAGCTTCAGATCCTGGATCTAAGTGGTAACACAAGTTCATTACTAGGCAGTCCCGCTTTTTCTAGTTTGCCAAACCTGCAAGAGCTTTACCTGAGAAAAACAGGTCTAACTGAAGTCCCGTCAGATATATTGGGATTGCATCAACTACGGATCCTTGACTTGGGTCAGAATTCCCTTCAATCGGTTCCAGAGGGGCTAAAAAATAGCACCTCTCTAGTGGAGCTTGACCTATCCGATAACAACATTTCCGCCCTTCCACCCGAGCTGGGTCTACTGGAACCAAGCCTTCAGGCATTGAGACTTGATGGGAACCCACTTAGAAGCATTCGGAGGCCTGTCTTGAATAAAGGAACTAAAGCTATTCTGCAATATTTGAAGGACAAATTGCCAGAGCAGTAG 1752 0.4218 MDRLLKAARGSGSLNLSNRSLSEVPDEVYRNLEGVGGTDDKWWEAVELQKLILAHNSIELLKDDIRNLGFLIVLNLSHNSLSQLPAAIGELPQLKMLDVSHNSLVSMPEEIGSAASLVKFDCSNNQLKELPSSLGRCLELSDLKGSNNLIASLPEDLANCSKMSKLDMEGNKLTVISENIISSWTMLTELNAAKNLLNGIPAGIGGLSRLIRLDLHQNRISSIPSSIIGCHSLTEFYLGNNNISTVPVEIGELSRLGTLDLHSNQLKEYPVEACKLSLLVLNLSNNSLSGLPPEMGKMTSLRKLLLSGNPLRTLRSSLVTGPTPALLRFLRSRLSEDSEDITTSKKDIIAMATRLSITSKEFSMGGLGLSAIPSEVWESEEVIKLDLSKNSIQELPVELSSCVSLQTLILSKNQIKDWPGSILQSLSSLSCLKLDYNPLRQIPSNGFEVLPKLQILDLSGNTSSLLGSPAFSSLPNLQELYLRKTGLTEVPSDILGLHQLRILDLGQNSLQSVPEGLKNSTSLVELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRPVLNKGTKAILQYLKDKLPEQ 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02898 583 ProSiteProfiles Leucine-rich repeat profile. 404 425 IPR001611 GO:0005515
Vifa1g02898 583 ProSiteProfiles Leucine-rich repeat profile. 209 230 IPR001611 GO:0005515
Vifa1g02898 583 SUPERFAMILY L domain-like 362 561 - -
Vifa1g02898 583 FunFam Leucine-rich repeat-containing protein 40 471 579 - -
Vifa1g02898 583 Pfam BspA type Leucine rich repeat region (6 copies) 135 196 IPR026906 -
Vifa1g02898 583 PANTHER - 146 313 - -
Vifa1g02898 583 ProSiteProfiles Leucine-rich repeat profile. 522 543 IPR001611 GO:0005515
Vifa1g02898 583 ProSiteProfiles Leucine-rich repeat profile. 277 298 IPR001611 GO:0005515
Vifa1g02898 583 Pfam Leucine rich repeat 209 266 IPR001611 GO:0005515
Vifa1g02898 583 Pfam Leucine rich repeat 404 461 IPR001611 GO:0005515
Vifa1g02898 583 Pfam Leucine rich repeat 499 557 IPR001611 GO:0005515
Vifa1g02898 583 Pfam Leucine rich repeat 47 104 IPR001611 GO:0005515
Vifa1g02898 583 PRINTS Leucine-rich repeat signature 71 84 - -
Vifa1g02898 583 PRINTS Leucine-rich repeat signature 91 104 - -
Vifa1g02898 583 Gene3D Ribonuclease Inhibitor 332 464 IPR032675 -
Vifa1g02898 583 SMART LRR_bac_2 68 87 - -
Vifa1g02898 583 SMART LRR_bac_2 91 110 - -
Vifa1g02898 583 SMART LRR_bac_2 520 540 - -
Vifa1g02898 583 SMART LRR_bac_2 275 295 - -
Vifa1g02898 583 SMART LRR_bac_2 426 445 - -
Vifa1g02898 583 SMART LRR_bac_2 114 133 - -
Vifa1g02898 583 SMART LRR_bac_2 497 516 - -
Vifa1g02898 583 SMART LRR_bac_2 207 226 - -
Vifa1g02898 583 Gene3D Ribonuclease Inhibitor 2 176 IPR032675 -
Vifa1g02898 583 SMART LRR_typ_2 450 473 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 545 567 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 426 449 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 91 114 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 403 425 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 115 137 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 298 321 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 253 276 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 380 402 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 474 496 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 160 183 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 497 520 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 521 543 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 207 230 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 231 251 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 68 89 IPR003591 -
Vifa1g02898 583 SMART LRR_typ_2 277 297 IPR003591 -
Vifa1g02898 583 Gene3D Ribonuclease Inhibitor 275 331 IPR032675 -
Vifa1g02898 583 Gene3D Ribonuclease Inhibitor 465 579 IPR032675 -
Vifa1g02898 583 Gene3D Ribonuclease Inhibitor 177 274 IPR032675 -
Vifa1g02898 583 SUPERFAMILY L domain-like 42 318 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02898 68 557 Receptor kinase-like Gene Family AT4G08850 28.947 3.10e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02898 - - gmx:100788118 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02898 1 452503921 452512854 Vifa1g02898 1 452503921 452512854 ECH