Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g02893 | ATGGGAGATCGTCATAGAGCTGTTTCCTTTGATGAATTACCTTCATATTTGCTTTTGGAAATCATGTGTTCAGGGAAGCTCAGTGCTGTTGACCTAGTTTGTTTGGAGTTTACTTCAAAAATCTTTGGTAATACTAATGGGTTATGCCCTTCCAAATTTAAGTCATTGGTGGAATATGCTGCTTTCCATTTGTGTGGCTCTCACACCATCTTTTGTAAGATGAGTTTGAATTCTCAAAAGGAGTTGTATGATCGATGCGGCGGAAATTGGAAGCGGGTTTTCAGGTTCTTGCAGTCTGTGGAACAAGCCTCTGGCATGGTTGAGACACCATCAGGAAATATGCAAATTACTACAGGAAAGTATCACACCTTAGCGATCAGCAACTCCTCGGTCTATTCATGTGGTTCTAGCTTGTGTGGTGCACTTGGTCAAGGGTCTGAAACAACACAGCTTCCAGCATTGGCCAAAATCGATTTCCCACGTTTGGTGCGAGTCATGCATGTTTCAGCCTCCTATAACCATGCAGCTTTTGTTATGCAGTCTGGAGAGGTATACACGTGTGGAGATAATTCGTATTTCTGCTGTGGTCATAGAGATACAAATCGAGCAATTTTCAGGCCACGCCTTGTTGAATCCTTAACAGGGATTCCTTGCAAGCAGGTTTCAACAGGACTAAACTTCACAGTCTTCCTCACTAGGCAAGGTCACGTGTATACTTGCGGAAACAACTCGCACGGCCAACTTGGTCTTGGTGACACTCAGGACAGACCGAACACCAAAATGGTTGAAGTCCTCGGTAACATAGGCCCTGTTGTTCAGGTTGCTGCCGGATCAAACTATATCTTATCTGTAACAGAAGATGGATCTGTATACTCCTTCGGATCAGGTTCTAATTTCTGTCTTGGTCACGGTAGTCAACATGACGAGTTGCTTCCTCGTTGCATACAGAAATTCAGAAGAAAAGGTATTCATGTTGTCCGCGTATCTGCCGGGGATGAGCATGCAGTCGCGCTTGATTCAAATGGAATTGTATATACATGGGGTAAGGGATATTGTGGTGCTTTAGGCCATGGAGACGAGATTGAGAAGACAAGACCAGAAATGTTATCTAGTCTCAAGAATCACGTGGCTGTTCAGGTGTGTGCAAGAAAGAGAAAAACCTTTATTCTACTTGAATCAGGTTTGGTGTATGCCTTTGGTTCGATGGGATTTGGCAGCCTAGGATTTTTCATTGAAAGAATAAATGACAAAATCTTAAAACCAAGACTCTTGACCACATTGAGATCTTACCATGTTTCTCAAATCAGCACTGGCCTTTACCACACTGTGGTTGTCACCAACCATGGACAAATATTTGGGTTTGGTGACAATGAAAGAGCTCAGCTGGGTCATGATTCTTTGAGAGAATGCACTGAACCAACTGAAATTTTCATAGAAAAATCATATGAAGATTATGATTCTGTTTATTAA | 1470 | 0.4245 | MGDRHRAVSFDELPSYLLLEIMCSGKLSAVDLVCLEFTSKIFGNTNGLCPSKFKSLVEYAAFHLCGSHTIFCKMSLNSQKELYDRCGGNWKRVFRFLQSVEQASGMVETPSGNMQITTGKYHTLAISNSSVYSCGSSLCGALGQGSETTQLPALAKIDFPRLVRVMHVSASYNHAAFVMQSGEVYTCGDNSYFCCGHRDTNRAIFRPRLVESLTGIPCKQVSTGLNFTVFLTRQGHVYTCGNNSHGQLGLGDTQDRPNTKMVEVLGNIGPVVQVAAGSNYILSVTEDGSVYSFGSGSNFCLGHGSQHDELLPRCIQKFRRKGIHVVRVSAGDEHAVALDSNGIVYTWGKGYCGALGHGDEIEKTRPEMLSSLKNHVAVQVCARKRKTFILLESGLVYAFGSMGFGSLGFFIERINDKILKPRLLTTLRSYHVSQISTGLYHTVVVTNHGQIFGFGDNERAQLGHDSLRECTEPTEIFIEKSYEDYDSVY | 489 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g02893 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 182 | 234 | IPR000408 | - | |
| Vifa1g02893 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 184 | 200 | IPR000408 | - | |
| Vifa1g02893 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 444 | 465 | IPR000408 | - | |
| Vifa1g02893 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 130 | 146 | IPR000408 | - | |
| Vifa1g02893 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 290 | 304 | IPR000408 | - | |
| Vifa1g02893 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 274 | 290 | IPR000408 | - | |
| Vifa1g02893 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 383 | 401 | IPR000408 | - | |
| Vifa1g02893 | 489 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 328 | 338 | IPR000408 | - | |
| Vifa1g02893 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 394 | 448 | IPR000408 | - | |
| Vifa1g02893 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 432 | 460 | - | - | |
| Vifa1g02893 | 489 | SUPERFAMILY | RCC1/BLIP-II | 126 | 478 | IPR009091 | - | |
| Vifa1g02893 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 342 | 393 | IPR000408 | - | |
| Vifa1g02893 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 449 | 489 | IPR000408 | - | |
| Vifa1g02893 | 489 | Gene3D | - | 87 | 320 | IPR009091 | - | |
| Vifa1g02893 | 489 | Gene3D | - | 321 | 483 | IPR009091 | - | |
| Vifa1g02893 | 489 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 163 | 476 | - | - | |
| Vifa1g02893 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 181 | 231 | IPR000408 | - | |
| Vifa1g02893 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 287 | 338 | IPR000408 | - | |
| Vifa1g02893 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 341 | 382 | IPR000408 | - | |
| Vifa1g02893 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 235 | 280 | IPR000408 | - | |
| Vifa1g02893 | 489 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 435 | 445 | IPR000408 | - | |
| Vifa1g02893 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 129 | 181 | IPR000408 | - | |
| Vifa1g02893 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 288 | 341 | IPR000408 | - | |
| Vifa1g02893 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 235 | 287 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa1g02893 | Vifa-Chr1 | 451930411 | 451937232 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa1g02893 | - | - | gmx:100782653 | 780.4 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa1g02893 | 1 | 451930411 | 451937232 | Vifa1g02893 | 1 | 451930411 | 451937232 | ECH |