Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02880 ATGGCTCTTCAAACTGCTTCTTTGCTTCCTGCTTCTTTCTCCATTCCAAAAGAGGGGAAGATTGGTGCATCTCTCAAGGACTCAACTCTTTTTGGTGTTTCATTGTCTGATTCTTTGAAAGGTGATTTCACCTCTTCTGCATTGAGGTGTAAGAGGGAATTGCGACAAAAAGTTGGTGCTGTGAAGGCGGAGACAGCGGCTCCGGCTACTCCAGCAGTTAACAAGTCATCATCTGAAGGGAAGAAGACATTGAGGAAAGGAAATGTTGTAATCACTGGTGCTTCATCTGGTTTAGGCCTAGCTACTGCTAAGGCTTTGGCTGAATCAGGAAAATGGCATGTAATTATGGCTTGCAGGGACTATCTCAAAGCTGCAAGAGCTGCGAAATCTGCTGGATTGGCCAAGGAAAACTATACAATCATGCATTTAGACCTTGCGTCTCTAGACAGTGTTCGTCAGTTTGTTGAGAATTTCAGGCGTTCTGAAACGCCATTGGATGTGCTTGTTAACAATGCTGCTGTTTACTTTCCAACTGCTAAGGAACCTAGTTTCACGGCGGATGGCTTTGAAATTAGTGTTGGGACGAACCATCTCGGGCATTTTCTTCTTTCGCGCCTTTTGCTTGAGGATCTAAGCAAATCTGATTACCCTTCAAAGCGCTTGATCATTGTTGGCTCAATCACAGGTAACACAAACACGTTGGCTGGAAATGTACCGCCGAAGGCTAACCTCGGTGACTTGAGGGGACTTGCTGGTGGCTTGACTGGGCTAAACAGTTCGGCCATGATAGACGGTGGAGATTTTGATGGTGCCAAGGCATACAAGGACAGCAAAGTCTGTAATATGCTCACAATGCAAGAGTTCCATAGAAGATATCATGAGGAAACTGGAATCACATTTGCTTCCCTTTACCCTGGTTGCATTGCCACAACAGGCTTGTTTAGAGAGCATATTCCCTTGTTCAGAACTCTATTCCCTCCATTCCAAAAGTACATAACCAAAGGTTATGTCTCAGAAGAAGAATCAGGAAAGAGACTTGCTCAGGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAATAATGCTTCTGCTTCATTTGAAAACCAGCTATCACAAGAAGCCAGTGATGCCGAGAAGGCTCGCAAGGTGTGGGAGGTTAGTGAGAAGCTTGTTGGTTTGGCCTAA 1200 0.4492 MALQTASLLPASFSIPKEGKIGASLKDSTLFGVSLSDSLKGDFTSSALRCKRELRQKVGAVKAETAAPATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLKAARAAKSAGLAKENYTIMHLDLASLDSVRQFVENFRRSETPLDVLVNNAAVYFPTAKEPSFTADGFEISVGTNHLGHFLLSRLLLEDLSKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLTGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEEESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASDAEKARKVWEVSEKLVGLA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02880 399 Gene3D - 73 399 - -
Vifa1g02880 399 CDD LPOR_like_SDR_c_like 86 398 - -
Vifa1g02880 399 PRINTS Glucose/ribitol dehydrogenase family signature 163 174 IPR002347 -
Vifa1g02880 399 PRINTS Glucose/ribitol dehydrogenase family signature 296 313 IPR002347 -
Vifa1g02880 399 PRINTS Glucose/ribitol dehydrogenase family signature 88 105 IPR002347 -
Vifa1g02880 399 NCBIfam protochlorophyllide reductase 85 399 IPR005979 GO:0016630
Vifa1g02880 399 PANTHER PROTOCHLOROPHYLLIDE REDUCTASE C, CHLOROPLASTIC 1 399 IPR005979 GO:0016630
Vifa1g02880 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 366 IPR036291 -
Vifa1g02880 399 Pfam short chain dehydrogenase 89 231 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02880 Vifa-Chr1 449241044 449242991 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02880 K00218 - gmx:100785637 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02880 1 449241044 449242991 Vifa1g02880 1 449241044 449242991 ECH