Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02879 ATGAACATACCCGCCCTGCTTCCCGACCAAAACTCGCCGGATTTCTTTTACGAATCACACGACCGTTTACTCTCTCTTTCATCTTCCTGCTCTTGCTCCAACTCCAACTCTGACCAGGAACAAGAAGAAGACCACCAAGATAACCAAAACCACAACAACCTCAACTGCAATACCAATACCAATAACAATATTTCCAATTTCAATTTTGCCCTTAACAGTTACGACATATGGATCTCCCAACCTTCCTCCGTCTCCGAACGAAGAACGCGTCTTCTCCAAACTATAGGTTTATCTTCAGACCCTACGCTTTCTCGCGGAAACCCTATCTTCCGATCCAAATCTGACTGTTACAATTCTTCAAACATCAATCAAGATGATTCTGATTCTTTTTCTTCTCTAAATAACTGTTTTCCCGGTAATTCTGCCGGATCCCCCGGGAAACCTCCGTCTGGAAAGAATTATTCTAGATGGACTCATTCTCATTCTGGTGCTGACTTTTTGCCGCCAACTTCGCCTTCTGCGGCCGAGGTGGAGATTGCCGTTTCTCGTGACCTCGAATGTGGTGAAATTGAAAGAATTCAGAGAGGGGAAGAAGACCAAGCTTGTACTATTAGAGATCTTGACAATGGGAAGGAGTTTGTTCTGAAGGAGGTTAGAGAAGATGGAATGTGGAATAAAGTGAAGGAGGTTGCTACTGGGAGACAGTTGACTATGGAGGAGTTCGAGATGACCGTTGGTCATTCGCCCATTGTGCAGGAGCTTATGCGGCGCCAGAATCACGAGGACACTGGTGATGGAATTGGGGGAAGCGGTGGTGCTAGTGGTGGAAGTGGGAATGGGAATGGGAATGGGAATGGTAATGGAGGTTCGTCTAAGGGGAAGAAGAAAGGAGCGAGTTGGTTGAAGAGTATTAAGAGTGTGGCTAGTTCGATGGCGGGTCATAAGGAGAGGCGGAGTAGTGATGAGAGGGATACTTCGTCGGAGAAAGGCGGTAGGAGGTCGAGTTCGGCTACCGATGATAGTCAGGACGGTTCGTTTCATGGTCCGGAGAGGGTGAGAGTGAGGCAATATGGGAAATCATGTAAAGAGTTAACTGCATTGTATAAGAGTCAAGAGATTCAGGCTCATAATGGGTCAATTTGGAGTATTAAGTTTAGTTTAGATGGCAAATATCTTGCTAGTGCTGGTGAGGATTGTGTCATTCATGTTTGGCGGGTTGTGGAGTCTGAGAGGAAAGGTGAGTTGTTGCTTATGGAGAAACAGGAAGATGTTAATGTGAATATGTTGTTTCTTGTGAATGGGTCGCCGGAACCCACTTTGTTGTCTCCTTTGGCGGATAATCTTCCAGAGAGGAAGAGAAAGGGGAGATCGTCTGTTAGTAGAAAGTCGTTGAGCTTGGACCAGTTTGTGGTCCCTGAAAATGTCTTTGCACTTACCGAAAAACCCATCTGCTCCTTTCAAGGACATTTGCATGATGTGCTTGACCTCTCCTGGTCTAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAATCTTGTTTGAAGATTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGATTGATCTTCATGAGATGGTCACCGCTGCATGTTATACGCCTGATGGCCAGGGTGCACTAGTTGGTTCATACAAGGGTAGCTGTCATTTATATAATACATCCGAAAATAAGTTGCAACAGAAAAGTCAAATCAATTTGCAGAACAAAAAAAAGAAATCAAATCACAAGAAAATCACTGGTTTCCAGTTTGCCCCAGGAAGTTCATCGGAAGTACTTATCACTTCTGCTGATTCTCGAATTCGGGTTGTTGATGGTATTGATCTGGTTCATAAGTTTAAAGGTTTTCGAAATGCAAGTAGTCAGATTTCAGCCTCCCTCGCAGCAAATGGTAAGTATATTGTTGCAGCAAGTGAGGATTCCCATGTATACATCTGGAAAAACGAAGCCGATTGCAGACCTAACAGAAGTAAAAGTGTCACCGTGACACAGTCCTATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCAGGAGAACATCCTGAGCTTGATAACAATAATGATGAAATTGCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGGTGTTGAGGGTTCCCAATCTGCTTCAGGTTACAATAGTCCGCATCATGCAACCATCGCGAGTGCGACAAACAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTCCTGGCTGCCAGAAATCATCAAAGCCCTCGTGTCAGTACGGATATCTCAAATGGGGTAAGTCAAAAAATGTCAGCTTGGGGTATGGTGATTGTAACTGCCGGTCTACGAGGTGAGATTAGAACTTTCCAAAATTTTGGATTGCCACTGCGAATATAA 2583 0.4417 MNIPALLPDQNSPDFFYESHDRLLSLSSSCSCSNSNSDQEQEEDHQDNQNHNNLNCNTNTNNNISNFNFALNSYDIWISQPSSVSERRTRLLQTIGLSSDPTLSRGNPIFRSKSDCYNSSNINQDDSDSFSSLNNCFPGNSAGSPGKPPSGKNYSRWTHSHSGADFLPPTSPSAAEVEIAVSRDLECGEIERIQRGEEDQACTIRDLDNGKEFVLKEVREDGMWNKVKEVATGRQLTMEEFEMTVGHSPIVQELMRRQNHEDTGDGIGGSGGASGGSGNGNGNGNGNGGSSKGKKKGASWLKSIKSVASSMAGHKERRSSDERDTSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKELTALYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWRVVESERKGELLLMEKQEDVNVNMLFLVNGSPEPTLLSPLADNLPERKRKGRSSVSRKSLSLDQFVVPENVFALTEKPICSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSNHKKITGFQFAPGSSSEVLITSADSRIRVVDGIDLVHKFKGFRNASSQISASLAANGKYIVAASEDSHVYIWKNEADCRPNRSKSVTVTQSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGEHPELDNNNDEIASANHPPTPVEENFGVEGSQSASGYNSPHHATIASATNSYFFDRISATWPEEKLLLAARNHQSPRVSTDISNGVSQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02879 860 MobiDBLite consensus disorder prediction 745 781 - -
Vifa1g02879 860 PRINTS G protein beta WD-40 repeat signature 546 560 IPR020472 -
Vifa1g02879 860 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Vifa1g02879 860 PRINTS G protein beta WD-40 repeat signature 504 518 IPR020472 -
Vifa1g02879 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 486 526 IPR001680 GO:0005515
Vifa1g02879 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 560 IPR001680 GO:0005515
Vifa1g02879 860 SMART WD40_4 479 517 IPR001680 GO:0005515
Vifa1g02879 860 SMART WD40_4 366 405 IPR001680 GO:0005515
Vifa1g02879 860 SMART WD40_4 613 652 IPR001680 GO:0005515
Vifa1g02879 860 SMART WD40_4 562 600 IPR001680 GO:0005515
Vifa1g02879 860 SMART WD40_4 520 559 IPR001680 GO:0005515
Vifa1g02879 860 SMART WD40_4 653 694 IPR001680 GO:0005515
Vifa1g02879 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 526 560 - -
Vifa1g02879 860 MobiDBLite consensus disorder prediction 260 354 - -
Vifa1g02879 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 406 - -
Vifa1g02879 860 PANTHER WD REPEAT DOMAIN 44 13 857 IPR040324 -
Vifa1g02879 860 MobiDBLite consensus disorder prediction 139 171 - -
Vifa1g02879 860 FunFam WD repeat-containing protein 44 467 733 - -
Vifa1g02879 860 MobiDBLite consensus disorder prediction 34 57 - -
Vifa1g02879 860 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 486 520 - -
Vifa1g02879 860 MobiDBLite consensus disorder prediction 311 336 - -
Vifa1g02879 860 MobiDBLite consensus disorder prediction 139 167 - -
Vifa1g02879 860 FunFam Transducin/WD40 repeat-like superfamily protein 331 435 - -
Vifa1g02879 860 SUPERFAMILY WD40 repeat-like 369 697 IPR036322 GO:0005515
Vifa1g02879 860 MobiDBLite consensus disorder prediction 274 292 - -
Vifa1g02879 860 Pfam WD domain, G-beta repeat 372 404 IPR001680 GO:0005515
Vifa1g02879 860 Pfam WD domain, G-beta repeat 481 516 IPR001680 GO:0005515
Vifa1g02879 860 Pfam WD domain, G-beta repeat 522 559 IPR001680 GO:0005515
Vifa1g02879 860 Pfam WD domain, G-beta repeat 656 694 IPR001680 GO:0005515
Vifa1g02879 860 Gene3D - 359 719 IPR015943 GO:0005515
Vifa1g02879 860 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 414 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02879 Vifa-Chr1 448656859 448661613 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02879 K20241 - gmx:100815065 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02879 1 448656859 448661613 Vifa1g02879 1 448656859 448661613 ECH