Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02834 ATGGCCAACTTCCTCGCCCAGTTCCAAACCATCAAGAACTCTTCCGATCGCCTCGTCATTTCAGTGGAGGATGTGAGTGATTTGTGGCCAACTGTCAAGCCTGCTTTTGAAGCGCGGTTGCCGTTTAAACGGGCGAGTTTGAATAACAAGGCGAGGAATGCTGTATTGGTTGAGAAGTTGCCGGCTGAGTTCATTTTAACTACAGATTCAAGGCTTCGGAGCCGGTTCCCTCAGGAGCAGTTGTTGTTCTGGTTTCGAGAGCCGTATGCAACTGTCGTGCTTGTTACCTGTGAGGATCTTGATGAGTTTAAAACCATCCTTAAACCACGCTTGAAATTAATTGTCCAGAATGACGAAAGGGAATGGTTTATTGTATTTGTATCTAAAGCTCATCCAGCTAATGACCAGGCAAACAAAATGTCAAAGAAAGTATATGCTAAACTTGAAGTTGATTTTAGCTCCAGAAAAAGAGAAAGATGCTGCAAATATGATATGCATTTCCCTGAAGCTAATTTTTGGGAAGATCTGGAATCAAAAATAATGGAATGCATCAGAAATACACTGGATAGGCGTGTACAATTTTATGAAGACGAGATACGGAAGCTCAGTGAACAGCGTCTCATGCCAGTCTGGAACTTCTGTAATTTTTTCATTTTGAAGGAAAGCTTGGCTTTTATGTTTGAAATGGCGCACCTTCATGAAGATGCCTTGCGTGAATATGATGAACTAGAACTCTGCTATCTTGAAACAGTTAACATGACTGGAAAGAAAAGAGACTTTGGCGGGGCAGACCATGCTGATGATCAGGCAGCAATTGTTAATCCAGGAAACAAAGCATTGACACAGATTGTCCAAGAGGATTCTTTTAGGGAGTTCGAATTCAGACAGTATCTGTTTGCCTGTCAATCAAAGCTCTTATTCAAGCTAAACCGACCTATTGAGGTAGCATCACGAGGTTATTCGTTCATATTAAGCTTCTCAAAATCCTTGGCATTGAATGAGCGTATTCTTCCTTTTTGTATGCGTGAAGTCTGGGTGATAACTGCTTGCTTGGCTTTAATTGAAGCAACCACTTCCAACTATAGTGATGGACTTGTGGCACCTGACGCAGAGAAGGAGTTCTTTTGTCTTCTTGGTGACCTATATTCTTTAGCCAGAGTTAAGTTCATGAGGCTAGCTTATTTAATTGGGTATGGTACTGATATAGAAAGAAGTCCTGTCAACAGTGCTTCCCTCAGCTTGCTACCTTGGCCTAAGCCAGCTGTTTGGCCCTCAGTCCCTGCTGATGCATCAGCAGAGGTGCTTGAGAAAGAAAAGTTGATTCTCCAAACAACTCCTAGAATCAAGCACTTTGGTATCCAGAGGAAACCCCTGCCCCTTGAACCAACTGTGCTACTACGAGAGGCTAACAGGCGGAGGGCTTCACTTTCCGCTGGAAATGTGTTTGAATTGTTTGACAGTCGCCAGGGTCCAATGGAAGGATCAGGTTTTGATTCACCCCCCAAGATGTCACCACAAAAAGTACTCTCAAATGCGATGGCACGCACTAATTCTTCTCCGGGAAACTTTGATAGCTCAATTGGCCGACCTATGAGGCTTGCTGAGATTTATATTGCTGCTGAACATGCTTTGAAGCAAACAATTTCTAATCTTGGGATGTTACAATCATTATCATCATCCGAGGAGTTTGAGAAAAAATATCTTGAGCTAACTAAAGGTGCTGCTGACAATTACCACCGTTCCTGGTGGAAAAGACACGGAGTTGTCCTTGATGGTGAGATAGCCGCTGTTGCCTTTAAACATGGACATTTTGACCAAGCTGCAAAGTCATATGAGAAGGTTTGTGCACTGTATAATGGGGAAGGATGGCAGGACTTGTTGGCCGAGGTCCTTCCCATTTTAGCAGAGTGTCAAAATATTCTTAATGATCAAGCTGGCTATTTGCTATCCTGTGTGCGGCTACTTTCTCTTGAAGATGGATTATTTTTGACAAAGGAGCGTCAAGCTTTTCAAGCAGAATTGGTTCGTCTTGCTCATAGTGAAATGAAAGATCCTGTCCCTCTTGATGTATCATCCTTAATTACATTTTCTGGAAATCCTGGCCCTCCATTAGAGTTATGCGACAGGGATCCTGATGAAGGTGCAAAGGCATTGAAGAGTTCTACAGCTATTGTGTTACACCCTGGTCGGAATACTATTACCTTGGATCTACCACCTCAGAAACCAGGATCATATGTTCTTGGAGTTCTTACTGGGCAGATTGGGCAGTTGAGGTTTAGATCTCATGGTGTTTCAAAACTTGGTCCTGCAGAGAGTGATGATGTTATGAGTTATGAAAAGCCAGCTAAACCTATTTTGAAGGTTTCCAAACCTAGAGCACTTGTGGATCTTGATGCTGCTGTTTCATCTGCTTTGTTAATAAATGAACATCAATGGCTTGGTATTTTAGTTCGGCCATTAAATTACTCCCTCAAGGCTGCTGTCTTGCATATTGATACTGGTCCAGGATTGGAGATTGAAGAGACAAACATAGTTGAGATGGAAAGCTATGTTGGTATATCAGACAATGATGAGGACGAGGTGCAGAAAGATGGTGCTCAAATTGAATCTTTGAATTCTGAGAAAAAGTTTGAACGATCAACTCTTCATGATGGTAAAATAGTGTTTCCGAATTGGGCAAGCGACACTCCTTCTATTCTCTGGGTTCTAATTCGGGCCATCAGTGACACACTCAACAGAGGATCTTCTTCAGTCACAACAAGGAGAGAGAGTATTGTAGATGGAATGAGAACAATAGCTCTAAAACTTGAATTTGGAGCATTCCACAATCAGATATTTGAAAGGACCCTAGCAGTGCATTTTACACATCCTCTCTATGTGAGGACACATGTTACTGATAAATGCAATGATGGTACCGTGCTTCTGCAGGTAATACTTCACTCTGAAATAAAGGCTACATTGACCATATACGATGCTTGGCTTGATCTTCAAAACGGATTTGTTCATTCTGGACAAACTGAGGGTAGACCTACTTCAAGCTTCTTCCCACTAATCATATCTCCCACTTCCAAAGCAGGAATTTTGTTTAGTATCTTCTTAGACAAGACAAATGCAGAAGAAGACATTAAGCAACCAGAAAGCATATTAAATATCAAATATGGAATTTCCGGTGATAGAACAGTTGGTGCTCATCCTCCTTTTATAAATGAATCTACTGGAGTTGATGGTGCTAGACAGGAGCTGATCTTCAAGAGTGTAATTATTTTGCAAAGGCCTGTGCTTGATCCATGCCTAGCCGTTGGTTTTCTTCCTCTCCCTTCAGATGGCCTGAGAGTTGGACAACTAGTTAAGATGCAATGGAGGGTGGAAAGGTTGAAGAATTTGAAGGAGGAAGAAATTTCTGCACAGAATGATGAGGTGTTGTACGAGGTAAATGCAAATTCTGGAAATTGGATGATCGCTGGAAGGAAAAGAGGGCATGTATCACTCTCCAAAAATCAAGGTGCAAGGATAATTATCACAGTATTATGCATGCCACTGGTTGCTGGTTATGTGCGCCCTCCTCTACTCGGGTTGCCAGAAATTGACGAGGCAAATATAAGGTGTAAACCTTCTGGGCCACATCTAGTGTGTGTTTTGCCACCAACACTTAGCTCATCCTTCTGCGTTCCAGTTAATTCATGA 3684 0.4218 MANFLAQFQTIKNSSDRLVISVEDVSDLWPTVKPAFEARLPFKRASLNNKARNAVLVEKLPAEFILTTDSRLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLIVQNDEREWFIVFVSKAHPANDQANKMSKKVYAKLEVDFSSRKRERCCKYDMHFPEANFWEDLESKIMECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMTGKKRDFGGADHADDQAAIVNPGNKALTQIVQEDSFREFEFRQYLFACQSKLLFKLNRPIEVASRGYSFILSFSKSLALNERILPFCMREVWVITACLALIEATTSNYSDGLVAPDAEKEFFCLLGDLYSLARVKFMRLAYLIGYGTDIERSPVNSASLSLLPWPKPAVWPSVPADASAEVLEKEKLILQTTPRIKHFGIQRKPLPLEPTVLLREANRRRASLSAGNVFELFDSRQGPMEGSGFDSPPKMSPQKVLSNAMARTNSSPGNFDSSIGRPMRLAEIYIAAEHALKQTISNLGMLQSLSSSEEFEKKYLELTKGAADNYHRSWWKRHGVVLDGEIAAVAFKHGHFDQAAKSYEKVCALYNGEGWQDLLAEVLPILAECQNILNDQAGYLLSCVRLLSLEDGLFLTKERQAFQAELVRLAHSEMKDPVPLDVSSLITFSGNPGPPLELCDRDPDEGAKALKSSTAIVLHPGRNTITLDLPPQKPGSYVLGVLTGQIGQLRFRSHGVSKLGPAESDDVMSYEKPAKPILKVSKPRALVDLDAAVSSALLINEHQWLGILVRPLNYSLKAAVLHIDTGPGLEIEETNIVEMESYVGISDNDEDEVQKDGAQIESLNSEKKFERSTLHDGKIVFPNWASDTPSILWVLIRAISDTLNRGSSSVTTRRESIVDGMRTIALKLEFGAFHNQIFERTLAVHFTHPLYVRTHVTDKCNDGTVLLQVILHSEIKATLTIYDAWLDLQNGFVHSGQTEGRPTSSFFPLIISPTSKAGILFSIFLDKTNAEEDIKQPESILNIKYGISGDRTVGAHPPFINESTGVDGARQELIFKSVIILQRPVLDPCLAVGFLPLPSDGLRVGQLVKMQWRVERLKNLKEEEISAQNDEVLYEVNANSGNWMIAGRKRGHVSLSKNQGARIIITVLCMPLVAGYVRPPLLGLPEIDEANIRCKPSGPHLVCVLPPTLSSSFCVPVNS 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02834 1227 Coils Coil 185 205 - -
Vifa1g02834 1227 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 1109 1186 IPR022233 -
Vifa1g02834 1227 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 8 711 IPR045126 GO:0048193|GO:1990071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02834 K20307 - gmx:100787264 2179.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02834 1 440088964 440102722 Vifa1g02834 1 440088964 440102722 ECH