Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02642 ATGATTGAAGGTGAATTTGAAGAATCATTGATAGTTGTTGTGTTGTGGACCAATGGTTTTATTCCTAGCTCGTTTCGGGCGCTCTCGAGTTATCTGAGGATTGTTTCCTCGGGTGCTTCTACCGTTGCACGGTCAGCTGCGTCCGTTGCTTCGTCTATTGTGGATAGGGATGATGTTGCTGATCATGATCAGGTGATCTGGGCCGGGTTTGATCAGTTGGAGAGTGAGGGTAATATTGTTCAACAAGTGCTTCTTCTAGGCTATCGGTCCGGGTTTCAGGTTTGGCATGTTGACGAATCAAACAATGTCCGGGACCTTGTTTCCAAACACGACGGTCCTGTTTCTTTTATGCAAATGGTTCCAAATCCAATTGCATTAAAAAAATCAGAAGACAAGTTTGCAAGCAGCCGTCCGTTGATGGTAGTTTGTGCTGATGGGCTCTTTACTGGTGGGAGCAATGTTAAGGATGGGTCGACTGGTCCTAATGGAACCGCTTCGAACTCGCATGACCAAATGAATGGCAACTATATGCCAACTACCGTTCAGTTTTATTCAATGAAATCCCACTCATATGTTCATGTAATGAAGTTTAGATCTGTTGTTTATTCTGTACGGTGCAGTTCTCGAATAGTTGCCGTTTCTCAATCCACTCAGATACATTGTTTTAATGCTACAACATTAGAAAGGGAATATACTTTACTTACCAATCCAATAGTGATGAATTCTCCTGGATCTGTTGGCATAGGCTATGGACCGCTTGCGGTGGGTCCAAGATGGCTGGCTTATAGTGGAAGCCCAGTTGCGGTATCCACTTCTAGCCATGTCAGTCCGCAGCATTTAACTCCTTCTGCAAGCTTTCCTGGTTTTTCTTCAAACGGGAGCATGATTGCACACTATGCCAAAGAATCAAGCAAGCATCTTGCTACTGGTATTGTGACCCTTGGTGATATGGGATATAAGAAACTTTCCAGATACTGTTCTGAAAACAATGGTTCACTACAATCTGCGAATTCTGGAGCAAAGGTCAATGGAAACATTAATGGCCATTCGGCAGATTTAGATAACATTGGAATGGTCATTGTTAAAGATATTGTCTCTAAAAATGTTGTTGCCCAATTTCGAGCTCACAAAAGTCCGATTTCAGCCTTATGTTTTGATCCTAGTGGCACCATATTAGTGACCACTTCTGTTCAGGGTCATAACATAAATGTTTTTAAGGTTATGCCTGTGCGTGAGAATTCGTCAGCATCTGATGCCGGTCCTTCTTACGTTCATTTATACAGGCTGCAACGTGGTTTTACAAATGCGGTTATACAAGATATTAGTTTCAGTGACGACAGCAAATGGATCATGATTAGTTCCTCGAGAGGCACTAGCCATTTATTTGCCATAAATCCTCAAGGAGGATATGTAAATATTCAGTCTAATGATGATAGTCCTACAAAAAATAGTGGATTAAGCACTATGACTAATCAAGTAGTTCGCCGGTCTCCTATGCCAGCCGTTCAAATGCCTAAACAGCAGAGCCTGTACGTGGGTGGTCCTCCAATCACACTTTCTGTAGTAAGCAGAATCAGGAATGGAACTAATGGTTGGAGAGGCACGGTAAGTGGTGCCGCTGCAGCTGCAACCGGTAGGAAGAATTCGCTTTCTGGGGCTATTGCGTCGTCTTTCCGTATTTTTAAAGGAAGTAGAGCCATATATGGAGAAGGGAACAATTCCAAGGCAAATTATCACTTGTTGGTCTTTTCACCTACTGGATCGATGATACAGTATGCTCTTCGGACAATAACTAGCCAAGATTCAGCTATTGTTTCTGGATTATCTCCTGCTTATGAATCCACTCCACAGGCTGATGCGAGATTAGTGGTTGAGGCAATGCATAAATGGAATATATATCATAGTCGGAGAGAGCGAGAAGACAATGTTGACATATATGGCGAAAATGGAATTTCCGACAGCAGCAAAATATATCCAGAGGAAGTAGAGGAGAACATCATTAACCCTAAAATTAAAAATGGCGTCACAAAAGCGTATCCCTGTGTCAATGAAGAGCATCATTTGTATATTTCAGAAGCGGAACTTCAAATGCATCCAGTTCAGATTCCGTTATGGGCAAAGCAAGAGATATATTTTAATTCAATGTTGAAAGAATCTACCATAATGGATGAAGAAGCTGCTTCTGGAGGAGAATTTGAGATTGAAAGGATTCCAACTTGCATGATTGAAGCTAGACCAAAAGACTTGGTTCCAATCTTCAACTATATGCAGACCCCAAAATTACAACAAACAAGGGCTCCTGCTATGGATAGCAAGAAAAATGAACATGTGTTGCATCGCGGTTCTGAGCTTTTTGGAAATGGTAGAGTTTCACCTAAACGTATTTCGGAGTCTCTTGAGTGCACGACTAATTATGGTGGTGAGGTTACCAATCATAAAAGTCAGATAGAAGGAACTGAGTGGGATAATCACATGATGCCGGTAGAAACTAACGGCTTTGTAAATAACACTGACACCCTTAAACCAAATTGTCAGCATGAGATTGTAAATAACAGGAGAGAGCACTTAAACATGGGGGCTCATCTCATGCGTGTAAATAGCAACTCAAGTCCTGAAAGTGAGGAACATCTTGAAGAAAACGAAGATGAATTCGATTGA 2658 0.4176 MIEGEFEESLIVVVLWTNGFIPSSFRALSSYLRIVSSGASTVARSAASVASSIVDRDDVADHDQVIWAGFDQLESEGNIVQQVLLLGYRSGFQVWHVDESNNVRDLVSKHDGPVSFMQMVPNPIALKKSEDKFASSRPLMVVCADGLFTGGSNVKDGSTGPNGTASNSHDQMNGNYMPTTVQFYSMKSHSYVHVMKFRSVVYSVRCSSRIVAVSQSTQIHCFNATTLEREYTLLTNPIVMNSPGSVGIGYGPLAVGPRWLAYSGSPVAVSTSSHVSPQHLTPSASFPGFSSNGSMIAHYAKESSKHLATGIVTLGDMGYKKLSRYCSENNGSLQSANSGAKVNGNINGHSADLDNIGMVIVKDIVSKNVVAQFRAHKSPISALCFDPSGTILVTTSVQGHNINVFKVMPVRENSSASDAGPSYVHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGYVNIQSNDDSPTKNSGLSTMTNQVVRRSPMPAVQMPKQQSLYVGGPPITLSVVSRIRNGTNGWRGTVSGAAAAATGRKNSLSGAIASSFRIFKGSRAIYGEGNNSKANYHLLVFSPTGSMIQYALRTITSQDSAIVSGLSPAYESTPQADARLVVEAMHKWNIYHSRREREDNVDIYGENGISDSSKIYPEEVEENIINPKIKNGVTKAYPCVNEEHHLYISEAELQMHPVQIPLWAKQEIYFNSMLKESTIMDEEAASGGEFEIERIPTCMIEARPKDLVPIFNYMQTPKLQQTRAPAMDSKKNEHVLHRGSELFGNGRVSPKRISESLECTTNYGGEVTNHKSQIEGTEWDNHMMPVETNGFVNNTDTLKPNCQHEIVNNRREHLNMGAHLMRVNSNSSPESEEHLEENEDEFD 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02642 885 Gene3D - 80 481 IPR015943 GO:0005515
Vifa1g02642 885 SMART WD40_4 188 223 IPR001680 GO:0005515
Vifa1g02642 885 SMART WD40_4 366 406 IPR001680 GO:0005515
Vifa1g02642 885 SMART WD40_4 422 463 IPR001680 GO:0005515
Vifa1g02642 885 Pfam Breast carcinoma amplified sequence 3 514 751 IPR022175 -
Vifa1g02642 885 FunFam Breast carcinoma-amplified sequence 3 289 514 - -
Vifa1g02642 885 MobiDBLite consensus disorder prediction 865 885 - -
Vifa1g02642 885 SUPERFAMILY WD40 repeat-like 82 465 IPR036322 GO:0005515
Vifa1g02642 885 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 18 835 IPR045142 GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02642 Vifa-Chr1 415590305 415594075 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02642 - - gmx:100784596 1316.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02642 1 415590305 415594075 Vifa1g02642 1 415590305 415594075 ECH