Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02633 ATGGAGTCGATACTCGGTCGGGCTCTCGAATACACTCTCAAATACTGGCTCAAATCCTTCACCAGAGATCAGTTCAAATTGCAAGGCCACACCGTTCATCTCTCCAATTTAGATATCGACGGCGATGCTTTGCATTCCAGTGTTGGATTGCCGGCGGCGTTGAACGTTGCGTCCGCTAAAGTTGGCAAACTTGAGATAACGCTTCCTTCGGTGAGTTATGTGCAAACGGAACCGATCATTGTGCAAATTGATAGACTCGATCTTGTTCTTGAGGAGAATTCTGATTTTGATGCATCTTCGAATCCAAACAGTTCCACCTCTTCAGCTGCGCCTGCCAAGGGTAGCGGTTATGGTTTTGCTGACAAGATTGCAGATGGCATGACAATAAACATTCAAACAGTTAATCTATTACTTGAAACTCGCGGTAGTTCTTGTCGCCAAGGGGGAGCAACATGGGCACCACCTATGGCATCTATGACCATACGCAACCTTATGCTGTATACTACAAATGAAAACTGGCAGGTTGTTAATCTTAAGGAAGCGCGGGAGTTCTCCAGTAACAAAAATCACATATATGTCTTCAAAAAACTGGAATGGCAATCTCTGTCTATTGATCTTTTGCCGCATCCAGACATGTTCGCAGATGTTGAAGAGGGGTCAAACCTGAGGGATGATGATGGCGCAAAAAGAGTATTCTTTGGAGGAGAACGTTTTATAGAAGGAATATCAGGAGAAGCATATATCACAATTAAGAGAACTGAATTGAATAGTCCACTTGGACTTGAGGTTCAACTGCACATCAATGAAGCTGTTTGCCCTGCGTTAAGTGAACCAGGACTTCGTGCACTTCTTCGCTTCATGACCGGAGTATATGTCTGTCTAAACAGGGGTGATGTTGATTTAAAGGCGCAGCAGCGGTCCACTGAAGCAGCCGGGAGTTCTCTTGTATCAATTGTCGTAGATCATATATTTCTTTGCATTAAAGATGCTGAATTCCAGCTTGAATTTTTGATGCAGTCCCTCTTTTTCTCTAGGGCTAGTCTTTCTGAAGTAGACAATGACAAGAACTTGACCAAGATTACGATTGGTGGATTATTTTTGAGGGACACCTTTTCTTCCCCTCCATGTACTTTAGTGCAACCATCAATGCAAGCTGTCACTGGAGATGCTTTTCATGTGCCAGAATTTGCTAAAAGCTTTTGCCCTCCGATATATCCTCTAGGAGAACAACAATGGCAGTTGACCGAGGGTAGCCCTCTAATATGCCTCCATGCTCTCCAAATCATACCTTCTCCACTTCCACCATCATTTGCTTCTCAAACTGTTATTGACTGTCAGCCACTTATGATTCATCTCCAAGAAGAATCATGCCTGAGGATATCCTCTTTTCTAGCTGATGGTATTGTTGTCAGTTCTGGTGACATTTTACCAGACTTCTCAGTAAAATCTTTTATTTTTACTCTCAAGGGACTGGATCTTACAGTTCCTTTTGACAAGACCAAATTGGATAATTCTCAAAGTGACATGGACGATACAATCCATAACTCCTTTACGGGAGCAAGGCTTCATATTGAAAGCCTTTTATTTTTAGATTCACCTTCATTGAAACTAAGAATGCTGAACCTTGAGAAGGATCCTGCTTGCTTCTGTCTTTGGGAAGGTCAACCAATTGATGCTACCCAGAAGAAGTGGACTGCCAGAGCCTCCCAGCTTACTTTGTCTCTGGAAGCATGCATAGGTACAACTGGACATCAGACCTCAGGATTGTGGAGATGTGTTGATCTGGCAGAAGCTTGCATTGAAGTAGCCATGGCAACAGTTGATGGAAGCCCGTTGTTGAAAATTCCTCCTCCAGGGGGTATTGTTAGGGTTGGAGTGGCTTGCGAACAGTTTTTGTCCAACACTTCTGTTGAGCAATTATTTTTCGTCCTAGATCTCTATGGGTATTTCGGAAAAGTTAGTGAAATGTTGGCAATGGCTGGAAAAGGGAAACAACTGGAGGACATTGGGAACAAATCTTTTAGTGGAAAGCTTATGGACAAGGTTCCTAGCGACACTGCTGTGAGCTTAGCAGTGAAAAACCTCCAACTTCGATTCCTGGAGTCTTCATCAATGAATGTTGAGGGACTTCCATTAGTGCAATTTGTTGGAGATGATCTGTTTACTAGTGCTACTCATAGAACCCTTGGTGGGGCTATTGTTGTTTCATCTTCTCTACGCTGGGAGAGTGTTGAGATAAGTTGTGTGGATGCTGAGGGGAAATTGGCATGTGAAAGTGTCTCTTCCTTGAGTTCTAGCATAAATGGTCCTTCACTGAGTGATAGTGAATATCCTCATCTAAGACCTGTATTCTGGGTGCATAAGAATGAAGGACATCTAATGGATGCAAATGCTCATTCTTTCCCTTTTCTGGACATAAGCACGGTTCATGTCATACCATTACATGAACAAGACTTGGAGTCTCATAGTTTGAATGTCTCAGCTTTTGTATCTGGTGTTCGTCTTGGTGGGGGAATGAACTATACTGAAACCCTCCTGCATAGATTTGGAATACTTGAGCCTGACGGAGCTCCTGGGAAGGGTCTTTGTAAAGGGTTGGAAAACTTACAAAAGGGACCTTTGTCAAAACTTTTTAAGTCTACTCCTTTGATTGATGATACAGAAGATGTTGAAAGCACAGGGGAAGGGAAAGGAACAGGTTTTCCCCACTTGAAGAAGCCAGATGATGTGGATGTAACTATAGAATTGAGAGACTGGTTATTTGCTCTTGAAGGGGCAGAGGATATGGCTGAAAAGTGGTGGTTCTCCAGTCACGAAGACGAAGGAAGAGAAGATAGGTGTTGGCACACATCTTTCCATAGTTTACAAGTAAGTGCAAAAGGTAGCCCAAGTAATGTTTCTGGTGGGAAAGGTCAAATACAAAAGTTACGGCATCATCCAGTAGAAATGGTTACGGTTGGAGTTCAAGGGCTGCAAGTCCTGAAGCCTCATATCCTAAAAAACATTCCTTCATCAATGGTAATTGGCAACGGGGTTAAGGAACTAACTGACATAGTTGGAGGGGTTGGTCTTGAAGTTCGCTTAATATTATGTGAGGAGAATGTTGATGATGAAATGACTAACTGGGAAGTGGAAAATCTAAAATTCTCTGTTAGACAGCCGGTTGAGGCAGTTGTAACGAAGGATGAGCTTCAGCACCTTACTTTTTTGTGCAAATCTGAAATTGATTCGATTGGCCGAATAACTGCTGGAATTATACGGTTGCTTAAGTTAGAAGGCTCTGTTGGTCAGTCTGTAATTGATCAACTAGGGAACCTAGGAAGCGAAGGCATTGACAAAATTTTCTCTGGTGAAAAGGTCAGTAGAGATGGTAGCATTGGTAGTAGAGGACGTTCTCCATTACCAAACCTGATATATGAAGAACCAAACAAAACTCCGGAACAGACATTAACTTTGCTTGAGGAAGCGGTTATGGATTCACAGACTAAAATCAATGACTTAATCAGTGACATTGGTACTTCTGAGTCTTCTTCCTTTCAACACCTTACCATCGTCAAACTAAGTCGAAAAATCGAGACTATGCAAGGTTTGTTGCTGCAATTGCGGAATCAACTTTAG 3618 0.4256 MESILGRALEYTLKYWLKSFTRDQFKLQGHTVHLSNLDIDGDALHSSVGLPAALNVASAKVGKLEITLPSVSYVQTEPIIVQIDRLDLVLEENSDFDASSNPNSSTSSAAPAKGSGYGFADKIADGMTINIQTVNLLLETRGSSCRQGGATWAPPMASMTIRNLMLYTTNENWQVVNLKEAREFSSNKNHIYVFKKLEWQSLSIDLLPHPDMFADVEEGSNLRDDDGAKRVFFGGERFIEGISGEAYITIKRTELNSPLGLEVQLHINEAVCPALSEPGLRALLRFMTGVYVCLNRGDVDLKAQQRSTEAAGSSLVSIVVDHIFLCIKDAEFQLEFLMQSLFFSRASLSEVDNDKNLTKITIGGLFLRDTFSSPPCTLVQPSMQAVTGDAFHVPEFAKSFCPPIYPLGEQQWQLTEGSPLICLHALQIIPSPLPPSFASQTVIDCQPLMIHLQEESCLRISSFLADGIVVSSGDILPDFSVKSFIFTLKGLDLTVPFDKTKLDNSQSDMDDTIHNSFTGARLHIESLLFLDSPSLKLRMLNLEKDPACFCLWEGQPIDATQKKWTARASQLTLSLEACIGTTGHQTSGLWRCVDLAEACIEVAMATVDGSPLLKIPPPGGIVRVGVACEQFLSNTSVEQLFFVLDLYGYFGKVSEMLAMAGKGKQLEDIGNKSFSGKLMDKVPSDTAVSLAVKNLQLRFLESSSMNVEGLPLVQFVGDDLFTSATHRTLGGAIVVSSSLRWESVEISCVDAEGKLACESVSSLSSSINGPSLSDSEYPHLRPVFWVHKNEGHLMDANAHSFPFLDISTVHVIPLHEQDLESHSLNVSAFVSGVRLGGGMNYTETLLHRFGILEPDGAPGKGLCKGLENLQKGPLSKLFKSTPLIDDTEDVESTGEGKGTGFPHLKKPDDVDVTIELRDWLFALEGAEDMAEKWWFSSHEDEGREDRCWHTSFHSLQVSAKGSPSNVSGGKGQIQKLRHHPVEMVTVGVQGLQVLKPHILKNIPSSMVIGNGVKELTDIVGGVGLEVRLILCEENVDDEMTNWEVENLKFSVRQPVEAVVTKDELQHLTFLCKSEIDSIGRITAGIIRLLKLEGSVGQSVIDQLGNLGSEGIDKIFSGEKVSRDGSIGSRGRSPLPNLIYEEPNKTPEQTLTLLEEAVMDSQTKINDLISDIGTSESSSFQHLTIVKLSRKIETMQGLLLQLRNQL 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02633 1205 Coils Coil 1184 1204 - -
Vifa1g02633 1205 PANTHER UNCHARACTERIZED 1 1203 IPR026728 -
Vifa1g02633 1205 Pfam N-terminal region of Chorein or VPS13 1 102 IPR026854 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02633 Vifa-Chr1 413395185 413403922 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02633 - - gmx:100803142 1956.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02633 1 413395185 413403922 Vifa1g02633 1 413395185 413403922 ECH