Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02608 ATGTGGAGAGATCCAGGAGTTTCAGCTGATTCTTTCTATCAAACTCGCCCTGATTGCACCGATGTCCCCATTTCTCGATTCAAGATCAAGCCTGGTAAGACACTAAGTCCGAGAAAATGGCATGCTGCATTTACTCAAGAAGGATATCTGGATATAGGCAAGACTTTGAGACGAATCTACCGAGGGGGAGTCCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTACTTGGCTGCTACGACCCGAAGAGTACATTTGACGAAAGAGATCAAATAAGACAACGCCGAAGGAGGCAATATGCTACATGGAAAGAAGAATGTCGGCAACTGTTTCCTCTTGTTGGAAGTGGTAGATTTATCACATCACCTGTAATTACTGATGATGGTCAGCCAATTCCAGATCCATTGGTTATGCCAGAAACCAATACAGCCAATGGATCAACTGCACTTCATCAAGATGATAACAGGCTTTCAAGTATAAATTCTGCAAATAATTTACAAAATGTGACAGACAAGAAACTAATCCAGTGGATGTTAACTCTCCATCAAATCGGTCTTGATGTGGTTCGCACTGACAGGACAATGGTTTTTTACGAGAAGCAAGAAAACTTGTCAAAGCTATGGGATATTCTTGTAGTTTATGCTTGGATAGATAAAGAAGTTGGGTACGGTCAAGGAATGAGTGACCTATGCTCCCCAATGATAATTCTTCTTGATGATGAAGCAGACGCATTTTGGTGCTTTGAGCGTCTGATGCGCAGACTTCGAGGAAATTTCAGAAGCACTGGTCGCACTCTTGGGGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTCAAGTCATTGATCCAAAACTTCATAAACATATAGAACATATTGGTGGAGGTGACTATGTGTTTGCTTTTCGGATGCTAATGGTTCTGTTTCGTCGAGAATTTTCCTTTTGTGATTCATTGTACCTATGGGAGATGATGTGGGCTCTGGAATATGATCCTCACATGTTCATGATGTATGAAGAAGCTCAAACAGCTTCTGAAAAAGCTGAGAGAGTCAAAGGAAAAGCAAAGTCAATCCGACAATGTGGAAAATATGAGAGGGAAAATTTGAAAAATGGAGCAAAGAATACCGAAACTCCTCTTCCTATATCAGTTTTCCTTGTTGCCAGTGTGTTGAAAGATAAAAGTACAACACTACTCCATGAAGCGCGAGGCTTGGACGATGTTGTCAAGATATTGAATGACACAACAGGAAATCTAGATGCCAAAAAGGCTTGTATTGAGGCTATGAAGCTTCACAAAAAGTATTTGAAAAAGGCCAAGAAAGCTTAG 1329 0.4086 MWRDPGVSADSFYQTRPDCTDVPISRFKIKPGKTLSPRKWHAAFTQEGYLDIGKTLRRIYRGGVHPSIRGEVWEFLLGCYDPKSTFDERDQIRQRRRRQYATWKEECRQLFPLVGSGRFITSPVITDDGQPIPDPLVMPETNTANGSTALHQDDNRLSSINSANNLQNVTDKKLIQWMLTLHQIGLDVVRTDRTMVFYEKQENLSKLWDILVVYAWIDKEVGYGQGMSDLCSPMIILLDDEADAFWCFERLMRRLRGNFRSTGRTLGVEAQLSNLASITQVIDPKLHKHIEHIGGGDYVFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHMFMMYEEAQTASEKAERVKGKAKSIRQCGKYERENLKNGAKNTETPLPISVFLVASVLKDKSTTLLHEARGLDDVVKILNDTTGNLDAKKACIEAMKLHKKYLKKAKKA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02608 442 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 34 413 - -
Vifa1g02608 442 SMART tbc_4 60 352 IPR000195 -
Vifa1g02608 442 Pfam Rab-GTPase-TBC domain 164 334 IPR000195 -
Vifa1g02608 442 Gene3D - 266 442 - -
Vifa1g02608 442 FunFam TBC1 domain family member 15-like 161 259 - -
Vifa1g02608 442 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 159 259 - -
Vifa1g02608 442 ProSiteProfiles TBC/rab GAP domain profile. 63 329 IPR000195 -
Vifa1g02608 442 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 267 435 IPR035969 -
Vifa1g02608 442 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 289 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02608 Vifa-Chr1 409587177 409591242 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02608 - - aprc:113854580 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02608 1 409587177 409591242 Vifa1g02608 1 409587177 409591242 ECH