Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02603 ATGATTACCGCAGGCAGAATCAAATCTGTCGATTTCTACAGAAAAATCCCAAGAGATTTAACTGAGGCATCATTATCTGGAGCTGGGTTATCAATAGTAGCTGCTCTTACCATGGTGTTTTTATTTGGAATGGAACTTAGCGAGTATTTATCTGTCAGCACCTCTACATCCGTGATCATTGACAAGAGTTCTGATGGGGACTTTTTACGTATTGATTTCAATTTCAGTTTTCCTGCACTTTCATGTGAGTTTGCATCGGTCGATGTGAGCGATGTGCTTGGAACAAGCAGGCTGAATCTGACAAAAACAATTCGCAAATTTTCTATTGACTCAAATTTAATACCCACCACTGGAGCTGAATTTTATTCTAGCCCGGCTGCTAATGTCATTAAGCATGATGATAAATTGGACGAGGAGTCTGTTGAAGGTGCTTTTGTATTCACATCAGAAAATTTTGATAAATATTCTCATCAATTTCCAATTACAGCTGTGAATTTTTATGCTCCTTGGTGTTACTGGAGTCAACGCCTGAAACCTTCATGGGAGAAGGCGGCTAAAATATTAAGGGAGAGATATGATCCGGAAATGGATGGCCGAATACTTTTGGGGAAGGTAGATTGCACTCAAGAAGCAGACTTGTGTCGGAGGCATCACATACAAGGGTATCCATCCATTCGTATCTTTCGTAAAGGAAGTGATGTCAGAAGTGACCATGGACATCATGATCATGAGTCATATTATGGAGATCGTGATACAGATACCCTTGTTAAGACAATGGAGAATGTAGTGGCGTCTCTCCCTTCTCAGAAGCTAGCTTTGGAGGATAAATTAAATGTTACAGAGAATGCAAAAATACCAGCACCATCAGGTGGGGGATGTAGAATTGAAGGATATGTACGTGTGAAGAAGGTTCCAGGAAGCTTGTTCGTCTCAGCAAGATCTGATAGCCATTCCTTTGATGCTTCTCAAATGAACATGTCGCATGTCATACATCATTTATCTTTTGGAAGGAAATTGTCGCCTAGGATTTTAAATGATGTCAAGCGCTTGATACCTTATGTTGGTAACAGCCATGACAGACTGAATGGTCTGTCATTCATCAATACAAATGATTTAGGAGCAAATGTTACTATGGAGCATTACCTTCAGATAGTTAAAACAGAAGTGATTACTAAAAAAGACTATCAATTAGTTGAGGAGTACGAGTACACAGCACACAGCAGTGTGGCACACAGTTTACACATTCCTGTTGCGAGGTTCCATCTTGAACTTTCCCCCATGCAGGTCTTGATAACTGAACATCAGAAGTCATTTTCACATTTTATTACAAACGTCTGTGCTATTATTGGGGGTGTTTTCACGGTAGCTGGAATTGTGGAATCAATTTTTTACAACACTGTTAGGATAATGAGAAAAGTTGAGCTGGGCAAGAATTTTTGA 1440 0.3972 MITAGRIKSVDFYRKIPRDLTEASLSGAGLSIVAALTMVFLFGMELSEYLSVSTSTSVIIDKSSDGDFLRIDFNFSFPALSCEFASVDVSDVLGTSRLNLTKTIRKFSIDSNLIPTTGAEFYSSPAANVIKHDDKLDEESVEGAFVFTSENFDKYSHQFPITAVNFYAPWCYWSQRLKPSWEKAAKILRERYDPEMDGRILLGKVDCTQEADLCRRHHIQGYPSIRIFRKGSDVRSDHGHHDHESYYGDRDTDTLVKTMENVVASLPSQKLALEDKLNVTENAKIPAPSGGGCRIEGYVRVKKVPGSLFVSARSDSHSFDASQMNMSHVIHHLSFGRKLSPRILNDVKRLIPYVGNSHDRLNGLSFINTNDLGANVTMEHYLQIVKTEVITKKDYQLVEEYEYTAHSSVAHSLHIPVARFHLELSPMQVLITEHQKSFSHFITNVCAIIGGVFTVAGIVESIFYNTVRIMRKVELGKNF 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02603 479 CDD PDI_a_family 146 259 - -
Vifa1g02603 479 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 6 478 IPR045888 -
Vifa1g02603 479 Gene3D Glutaredoxin 136 285 - -
Vifa1g02603 479 ProSiteProfiles Thioredoxin domain profile. 125 264 IPR013766 -
Vifa1g02603 479 Pfam Endoplasmic reticulum vesicle transporter 283 459 IPR012936 -
Vifa1g02603 479 FunFam Protein disulfide-isomerase 5-4 132 285 - -
Vifa1g02603 479 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 96 IPR039542 -
Vifa1g02603 479 SUPERFAMILY Thioredoxin-like 146 262 IPR036249 -
Vifa1g02603 479 Pfam Thioredoxin 146 243 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02603 Vifa-Chr1 409084246 409090741 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02603 - - gmx:100806869 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02603 1 409084246 409090741 Vifa1g02603 1 409084246 409090741 ECH