Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02599 ATGACATCGATTGGTGATAGTGACAACATATTACTCAACATTTCACCAGATGAAGTTAATGATTTTCTAGGCGAATACACATGGGAAGGGAAATGGGAAAATGTTATAATGTTATACTACGAATTTCCAGAACAAGCTCATACATCAATCATCTCTGATTCAGATGGTACTGCATTACATGTAGCAATAGATTTAGACGAAGAAACAGTCGTTAAAGAGCTTGTAAATGCAATTTTGACGCACCATATCGAAATTAGTGATCAGAGTCAGAGTCAGAGAGTTGAAGCTTTGGAAATGGAGAATGAACGTGGTGACACGCCATTGCATTTTGCAGCGTCGAGAGGTTTTGCTAGATTATGTAAGTGTATTATTGGTGGAAATAAGGAGAGAATATATCTGTTGAGTCGTAAAAATAAACAAGGCGAGACGCCTATTTTTCAAGCGGCTGTTAATTGGAGAAAACAAACTTTTGCTTATCTTGCTCATATTTCTAAAGATATAGTCAATTTGCAAGATCTTGTTAGAGATGATGGTGATAGTATTCTTCACGCCGCTATCCGAGGAGAATATTTCGATTTAGCTGTGATAATCGTACAATACTATGACTTTCTAAGCACACATTTGAATAAAGAGGAATCAACTCCTCTCAAAGTTCTTGCAACTAGACCTTCAGCATTCAAAAGTGCAAGCAACCTTTCGTGGTATAAGCGAATCCTATACCATTGTATACTAGTGGAACCACTGGACGCGGAGAGAACAATGAGATTGAATTTGAGAAAGATGGAGGACCGTCCCGATTGTAATAAGATGAAGTTTCCAGAGAACTATACAGCTTTATATGATTTTGTTTCTATATGGTTAGGTGCCATAATATTTGGAAAAAAGTTTTGGAAAAAGAAACAGCACGACACGGAAGATCCATCAAATGAGACTCGTGGTCCGCTTAGATCAGAAAAATATCCTGTTGGGTATTTGCCACCAAATTATGAAACCTTTCATCAATTTGTCAAGTCTGCATATGTACATACTCTTGGCCTATCAGGAGTAGAGTTAAAGGACGTAAAGATTGCGAAAAAGAAGCATCAATGGAGTAGTCAGCTGTTGAAGGCGTTAATGAAAAGACCTTACGCAGCATTCACGGGAAGTGGAGGGCGCCCAACGGATGTAGTAGTTGATCCCGATATGTATAATGTTTTTACACTAACGGAACAAGGTGGAGCCGGAAGGTTTAAAGATGATGATGAACAAAAACCTGATGTCATAGAGGAAACATCATTAACTTGGAGTGAAAAAATGAAGGATGGTGAAAAGGAAATCGACAAAAAGATGACACCGTTTTTGGTTGCAGCAAGAAATGGAATAGTTGAAGTAGTGAAAGAAATTCTAATCAAAATACCAAGTGCTATTCATAACACTAACTCAAAAAAAGAAAATGTATTGCTTGTTGCAGTGAAGTATCGGCAACCTCTTATCGTTGAGACACTGCGAGAGATTAAACACTCGAAACCAGAACTATGGAATAACTTGATTCTTGCAATGGATGAAGATCAGAATACAGTATTACATTTGGCAGCCGAGGCATTAGGTGGTGATAAACCATGGCAGATTGCTGGTTCTGCATTGCAGATGATGTGGGATATAAAATGGTTTCAGTATGTCAAAAGCCTTGTACCGCCGCACTTCTATTTCAGAAGCAACAATGAAGGCAAAACATCAGGAGAAATCTTCAAGAAAACGCACACGGATCTTATAAAAGACAGCAGCGACTGGCTAAAGGACACATCCGAATCCTGCTCGGTTGTAGCCGCTCTTGTAGCGGGTGTTTCCTTCGCCACAGCAAGCGCTGTACCTGGCGGAACAACTGATAAAGGTAGGCCAATACTAGAAGGCAAGCCTGCATTCGATGTCTTCGCCATTTCTTCACTTATCGGTCTTTGTTTCTCTGTCACTGGACTCATCATGTTTCTTTCTATTCTCACTTCACGAAAACAGGCCAAAGATTTTCGTCGCGATTTACCATCAAAACTTCTTATTGGGTTGAGTTCTCTTTTTGTGTCCATTGCTTCTATGTTTGTTTCGTTCTGCACTGGACATTTTTTTCTGCTTAGCCATAACTTCAAATCGATTTTGTTCCCAATTTATGCAGCTACTTGTTTACCTGTGACTTTCTATGCCGTTGCACAGTTTCCTCTTTATTTTGATCTTTTAACAGCTATTTTAACTAAGGTGCCAATGGCAACTGATAAAGGTGATGGTTTATAA 2262 0.3904 MTSIGDSDNILLNISPDEVNDFLGEYTWEGKWENVIMLYYEFPEQAHTSIISDSDGTALHVAIDLDEETVVKELVNAILTHHIEISDQSQSQRVEALEMENERGDTPLHFAASRGFARLCKCIIGGNKERIYLLSRKNKQGETPIFQAAVNWRKQTFAYLAHISKDIVNLQDLVRDDGDSILHAAIRGEYFDLAVIIVQYYDFLSTHLNKEESTPLKVLATRPSAFKSASNLSWYKRILYHCILVEPLDAERTMRLNLRKMEDRPDCNKMKFPENYTALYDFVSIWLGAIIFGKKFWKKKQHDTEDPSNETRGPLRSEKYPVGYLPPNYETFHQFVKSAYVHTLGLSGVELKDVKIAKKKHQWSSQLLKALMKRPYAAFTGSGGRPTDVVVDPDMYNVFTLTEQGGAGRFKDDDEQKPDVIEETSLTWSEKMKDGEKEIDKKMTPFLVAARNGIVEVVKEILIKIPSAIHNTNSKKENVLLVAVKYRQPLIVETLREIKHSKPELWNNLILAMDEDQNTVLHLAAEALGGDKPWQIAGSALQMMWDIKWFQYVKSLVPPHFYFRSNNEGKTSGEIFKKTHTDLIKDSSDWLKDTSESCSVVAALVAGVSFATASAVPGGTTDKGRPILEGKPAFDVFAISSLIGLCFSVTGLIMFLSILTSRKQAKDFRRDLPSKLLIGLSSLFVSIASMFVSFCTGHFFLLSHNFKSILFPIYAATCLPVTFYAVAQFPLYFDLLTAILTKVPMATDKGDGL 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02599 753 SMART ANK_2a 54 83 IPR002110 GO:0005515
Vifa1g02599 753 SMART ANK_2a 103 133 IPR002110 GO:0005515
Vifa1g02599 753 SMART ANK_2a 177 208 IPR002110 GO:0005515
Vifa1g02599 753 SMART ANK_2a 441 471 IPR002110 GO:0005515
Vifa1g02599 753 SMART ANK_2a 475 505 IPR002110 GO:0005515
Vifa1g02599 753 Pfam Domain of unknown function 589 700 IPR026961 -
Vifa1g02599 753 PANTHER CASKIN 54 738 - -
Vifa1g02599 753 SUPERFAMILY Ankyrin repeat 443 525 IPR036770 -
Vifa1g02599 753 SUPERFAMILY Ankyrin repeat 56 224 IPR036770 -
Vifa1g02599 753 Gene3D - 412 528 IPR036770 -
Vifa1g02599 753 Gene3D - 23 242 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02599 Vifa-Chr1 408755913 408758579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02599 412 705 Miscellaneous Gene Families AT5G54710 24.225 1.51e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02599 - - psat:127118019 1438.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02599 1 408755913 408758579 Vifa1g02599 1 408755913 408758579 ECH