Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01585 ATGAACCATTTAACCAGAAACAAAGCAAACTCAACCCCTCTTACCCCACTCACCTTCTTAGACAGAGCTGCCATTGTCTACGGTGACTCCACTTCCATCATCTACAACAATACTTCCTTCACATGGTCACAAACCAACCGTCGATGCCTCCAACTCGCATCTTCGCTATCATCTCTCGGCATCAGAAAAGGCCATGTCGTCTCCGTTCTCTCCCCAAACACACCCGCCATGTACGAGCTGCACTTCGCCGTCCCAATGTCCGGTGCAATCCTCAACAACCTCAACTTCCGACTCGACCATAACTCCCTCTCCGTGCTCCTCATCCACAGCGAATCAAAACTCATCTTTGTAGACATTCTCTCTTTAACTCTAACTTTCAATGCTCTCTCTTTATTCCCAACAAACATTCAGACCCCGAAACTAGTCCTCATCACTGATGATACTCTCGCACCACACCAGATTCCTCCACCACACAAAAATTCAAACATCATCAACACCTATGAGGGTCTTATAAATAAAGGTGATCCAAATTTCAAATGGATCCGACCCGACTCTGAGTGGGATCCCATTACGTTAAACTACACATCCGGAACGACGTCGTCTCCGAAAGGCGTAGTGCATTGCCACAGAGCAACATTCATCGTTTCACTGGACTCTCTCATAGACTGGTCAGTACCTATACAACCGGTTTTCCTCTGGACGCTACCGATGTTCCACTCTAACGGATGGAGCTACCCGTGGGGGATCGCAGCCGTGGGAGGAACAAACATCTGCGCGCGTAGATTCGACGCGCCGACGATCTACCGTTTGATCGAATCTCACGGAGTAACACACATGTGCGCCGCACCGGTTGTGCTTAACATTCTCTCAAATTTCAACAAATCAAAACCGTTAAAAAAACCGGTTCATGTCCTCACCGGAGGTTCATCTCCGCCGTCGACGATTCTCATTCGCGCTGAGGCTTTAGGTTTTGACGTTAGTCATGGATATGGATTGACTGAGACGTGCGGTGTGATTGTATCGTGCGCTTGGAAAAGAGAATGGGATAGGTTTCCGACGGCGGAGAAGGCAAGGATGAAGGCGAGACAGGGAGTGAAGAGGATCGGTGTAACCGAGCTTGACATTGTGGGACCCACCGGAGAAAGCGTGAAGCGCGACGGTGTAACAGTTGGTGAGATAGTTGTGAAAGGTGCCTGTGTAATGCTTGGTTATTTGAAAGATGAGGGCGCCACGTTGCAGTGTATGAGAAATAATGGTTGGTTTTACACGGGTGATGTTGGAGTTATACATGAAAACGGTTATTTGGAGATTAAAGATCGAACCAAAGATGTGATTATAAGTGGTGGAGAGAATATGAGTAGTGTGGAGGTTGAGGCGGTTTTGTATATGCATCCGGCGGTGAAAGAGGCGGCGGTGGTGGCGAGACCGGATGAGTTTTGGGGAGAGACGCCGTGTGCGTTTGTGAGTTTGAAGGATGAGTTGAAGGTAAATGAAATGCCGTCGGAGAGAGAGGTTAAGGAGTTTTGTAGGGAGAGGTTGCCGCATTTTATGGTGCCTAAGACGGTTGTGTTTAAGAAGGAGCTGCCGAAGACTGCGACGGGGAAAGTTCAGAAACATGTGCTTAGAGGGGTTGCTAAGGGTATGGGGTCATTGCCGTTACCAACTCCATCGCTACTTCCAAGTCGCATTTAA 1692 0.4852 MNHLTRNKANSTPLTPLTFLDRAAIVYGDSTSIIYNNTSFTWSQTNRRCLQLASSLSSLGIRKGHVVSVLSPNTPAMYELHFAVPMSGAILNNLNFRLDHNSLSVLLIHSESKLIFVDILSLTLTFNALSLFPTNIQTPKLVLITDDTLAPHQIPPPHKNSNIINTYEGLINKGDPNFKWIRPDSEWDPITLNYTSGTTSSPKGVVHCHRATFIVSLDSLIDWSVPIQPVFLWTLPMFHSNGWSYPWGIAAVGGTNICARRFDAPTIYRLIESHGVTHMCAAPVVLNILSNFNKSKPLKKPVHVLTGGSSPPSTILIRAEALGFDVSHGYGLTETCGVIVSCAWKREWDRFPTAEKARMKARQGVKRIGVTELDIVGPTGESVKRDGVTVGEIVVKGACVMLGYLKDEGATLQCMRNNGWFYTGDVGVIHENGYLEIKDRTKDVIISGGENMSSVEVEAVLYMHPAVKEAAVVARPDEFWGETPCAFVSLKDELKVNEMPSEREVKEFCRERLPHFMVPKTVVFKKELPKTATGKVQKHVLRGVAKGMGSLPLPTPSLLPSRI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01585 563 Gene3D - 2 442 IPR042099 -
Vifa1g01585 563 SUPERFAMILY Acetyl-CoA synthetase-like 10 547 - -
Vifa1g01585 563 Gene3D - 443 552 IPR045851 -
Vifa1g01585 563 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Vifa1g01585 563 Pfam AMP-binding enzyme 22 447 IPR000873 -
Vifa1g01585 563 CDD ttLC_FACS_AEE21_like 12 542 - -
Vifa1g01585 563 Pfam AMP-binding enzyme C-terminal domain 456 535 IPR025110 -
Vifa1g01585 563 PANTHER ACYL-ACTIVATING ENZYME 3 551 - -
Vifa1g01585 563 FunFam 2,3-dihydroxybenzoate-AMP ligase 442 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01585 Vifa-Chr1 261087374 261089065 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01585 1 548 EF-hand Containing Proteins AT1G21540 61.413 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01585 - - ahf:112702625 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01585 1 261087374 261089065 Vifa1g01585 1 261087374 261089065 ECH