Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01583 ATGGAAAAACTAAAACCAAACTCCGCAAACAACTCACCTCTCACACCCCTCACCTTTCTTGAAAGAGCATCAACAATTTATGGCGATTCTCCTTCAATTATCTACAACGACACCGTTTTCACATGGTCCCAAACCCACCGCCGATGCCTCCAACTCGCTTCCGCCATCACCTCCCTCGGAATCCGCCGCGGAAACGTCGTTTCCGTCATCGCCCCCAACATCCCCGCCATGTATGAACTCCACTTCGCCGTCCCCTTCACCGGCGCAATCCTTAACAACATCAATACGCGCCTTGACGCGCGTATTGTCTCTTCTATCCTGATTCACTCAGAGTCCAAACTAGTTTTCGTCGATTACGCTTCACGCGATCTCGTCCTAGAAGCGTTGTTGTTATTCCCTTCTTCACAACAACGTCCTCTTCTGATCCTCATCAAAGACGATGAAGAAACTTCATCATCGACCATTGGTTTCATCTCTACTTACGATGATCTAATAATGAGCAGTGATCCAGATTTTAATTGGGTTTATCCTATTTCCGAGTGGGATCCGATGATTCTCAACTACACCTCCGGTACGACGTCGTCTCCGAAAGGTGTAGTTCATTCACACCGAGGAACTTTCATCGTGACCGTCGATACTTTAATCGAATGGTCAGTTCCTAAACAACCGGTTTATCTCTGGACGCTACCGATGTTCCATGCTAACGGGTGGAGTTTCCCGTGGGGGATCGCAGCCGTGGGAGGAACTAATGTCTGTGTAAGAAAATTCGACGCTGAAATTGTTTTTTCTCTGATTAAGAAACATCACGTGACTCACATGTGTGGTGCTCCGGTTGTTCTCAACATGTTAACTAACTCACCGGATAATAAGCCCTTGGAGAAACCAGTTCATATTCTCACCGCCGGAGCACCTCCGCCAGCTGCGGTTCTTTTCCGGACGGAGTCGTTAGGGTTTATGGTGAGTCATGGATATGGATTAACCGAAACCGGTGGGTTGGTGATTTGTTGCACGTGGAAGAATAAATGGAATTTGTTACCTGCGACGGAGAGAGCGCGGTTGAAGTCACGGCAAGGAGTGAGGACGATAGGGATGACAAGCGTTGATGTGGTCAGTCCCAGCGGCGAAAGTGTGAAACGCGACGGAGCAACGTTGGGGGAGGTTGTTATGAGAGGTGGCTGTGTTATGTTAGGGTATTTGAAGGATCCTGAAGGAACTATAAATAGTTTGAAGAATGGTTGGTTTTACACCGGTGATGTTGGTGTGATGCATGAGGATGGATATTTGGAGATTAAAGATAGGTCAAAGGATGTGATTATTAGCGGCGGTGAGAATCTTAGTAGTGTGGAGGTTGAGTCGGTTTTGTATGGACATCCGGCGGTGAATGAGGCGGCGGTTGTGGCGAGAGCTGATGAGTTTTGGGGGGAAACGCCATGTGCGTTTGTGAGTTTGAAAGATGGGTTGAAAGGGAAGGAAATACCAACGGAGAAGGATATAGTTGAGTACTGTAGGAAGAATTTGCCGCATTATATGGTTCCGAAAACGGTGGTGTTCAAGGAGGAGCTTCCTAAAACATCTACTGGTAAGGTGCAGAAGTTTGTGCTTAGACAGATTGCTAAGGAAATGGGACCACTACAGAAAAGTCGAATGTGA 1650 0.4739 MEKLKPNSANNSPLTPLTFLERASTIYGDSPSIIYNDTVFTWSQTHRRCLQLASAITSLGIRRGNVVSVIAPNIPAMYELHFAVPFTGAILNNINTRLDARIVSSILIHSESKLVFVDYASRDLVLEALLLFPSSQQRPLLILIKDDEETSSSTIGFISTYDDLIMSSDPDFNWVYPISEWDPMILNYTSGTTSSPKGVVHSHRGTFIVTVDTLIEWSVPKQPVYLWTLPMFHANGWSFPWGIAAVGGTNVCVRKFDAEIVFSLIKKHHVTHMCGAPVVLNMLTNSPDNKPLEKPVHILTAGAPPPAAVLFRTESLGFMVSHGYGLTETGGLVICCTWKNKWNLLPATERARLKSRQGVRTIGMTSVDVVSPSGESVKRDGATLGEVVMRGGCVMLGYLKDPEGTINSLKNGWFYTGDVGVMHEDGYLEIKDRSKDVIISGGENLSSVEVESVLYGHPAVNEAAVVARADEFWGETPCAFVSLKDGLKGKEIPTEKDIVEYCRKNLPHYMVPKTVVFKEELPKTSTGKVQKFVLRQIAKEMGPLQKSRM 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01583 549 CDD ttLC_FACS_AEE21_like 11 535 - -
Vifa1g01583 549 Gene3D - 2 435 IPR042099 -
Vifa1g01583 549 Pfam AMP-binding enzyme C-terminal domain 449 528 IPR025110 -
Vifa1g01583 549 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Vifa1g01583 549 FunFam Long-chain-fatty-acid--CoA ligase FadD 1 435 - -
Vifa1g01583 549 PANTHER ACYL-ACTIVATING ENZYME 1 544 - -
Vifa1g01583 549 SUPERFAMILY Acetyl-CoA synthetase-like 12 540 - -
Vifa1g01583 549 Gene3D - 436 548 IPR045851 -
Vifa1g01583 549 FunFam 2,3-dihydroxybenzoate-AMP ligase 435 542 - -
Vifa1g01583 549 Pfam AMP-binding enzyme 22 440 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01583 Vifa-Chr1 260863879 260865528 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01583 1 541 EF-hand Containing Proteins AT1G21540 61.818 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01583 - - tpra:123921915 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01583 1 260863879 260865528 Vifa1g01583 1 260863879 260865528 ECH