Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01571 ATGGTCTGGGGTCTCTTCCCCGTCGATCCTCTTTCCGGTGAAGATAATTACTACATTTTCAAAACTGGAACTTACAAAGTTGGTCGAAAAGGTTGTGATGTAATCGTCACTAAGGATAAAGGGGTTTCTCGGGTTCATGCAGAAATAGTTGTTAATGCAATGAACATGTCAAATCGTCTACCAAATGTACAGTTAAGAGACTGCTCCAAGTACGGGACATTTGTCAGCAAGAATGTCGGGCTTAAGAAAAAAGTTCACGAGCTACCAAACAAAGAAACAGCATTACATGATGGCGACCTTGTTTCTTTTGGCACTGGTAGTGCTACCTACAAGTTTTGCCACGTCCCTCTCATTCTTTTCGTCTGTCCCACAAATAAAGTGGATCGATCTTTGGCAAAGAAAATTTCATCAATTGGTGCTAGTATTGCTCATACCTTGAATGTGGAGTGCACACATGTGCTGGTAGATCAACTCACGCCCTTAAAGAAGGATCTTGTTGATGCAGTTATTGCAAAAAAATCTTGTGTTCTCAAAACTTGGCTCGAGTTTTTTGCAGAAAAGAACATTAGCAATGAGATTCCTAGCTGTCATTCACATATTCCAACAGTGTCAGTGGAAGGAGCATCTATCAGAGTTGCTGATCCCAAAGCTCGCGAAAACTGTTTGAAAGGATACACTTTTGTGTTGGAATCTGTGCATTTGTATAAATTTGGGGATCAGCTAAAGTCTTTACTGGAAGTAGCTGGTGCTAAAACTATTTCATTTCAAGAATTCTCTTCGTATAGCCAAGGTTCAGATTATGGAGATGATAATCGTATGGTTTGTGTCACCCCAGAAGGAGCGGCATGCAAGCCTGATTTCATTAAATTATTAAGTTCCTTGCAAAAAGTCAATGAGATGGGTATAATAAATGCTGCCCTCAGTGGACATCTAGACCTGTCTATTTTGAAATCACCATGCGTGCTTATTTCATCGTCATGCTCAACAGACGAGACAATTGTAGCAGATTCAGATACTGAAGTTGAAACAGCCACATCACCCATTGCAAGTGAGGCATTATGTGGTGGAAATAAAGTAAAATATGTAAAAACAGAAGAATTAGATGACGGGGATGATGATTCCGGCACTTCACTCAAGAGAAAAGATGAGGGAGTGGAACCAACCTTAGATGATATTTCTACCAGTTTGCATGAAATAAAACATGGAAAAGCAGACATATCCCTGGAAACTTCAATCCGATCTGATACACATGCTACCAGCTTCAAGGATGGCACTGGCGGTATCCAAGTGAAGAAAGACAAGGTTGATGATTATGGAAGTGGAAATTCAGATATTGTTTACAGCCAAAATTTAGTTGTTCGATATATAAATACACTAACAAACAGAATTTCTGCACCAAACAGCAGCGTTCCAAATTTCAAACGATTTAGAAAGCCACATACTCAATCTGGAAATAGTTTCGACAACCTTGTTCCATTTGCAAAATATCCGTACAAGGATTCTGGCTATGGAAATGATGAGACAGCTGAGTATGTGAAGGAGGAGAAAAGGCGAAAGCAAAGAGAAGCCATGGCTGATGATCTATTTAATAATCAGAAGGCAAAAAAACGAGGCACAGCTGGTTCTCTTCACGGCATGCTTACTAGTACTAGATGA 1656 0.3992 MVWGLFPVDPLSGEDNYYIFKTGTYKVGRKGCDVIVTKDKGVSRVHAEIVVNAMNMSNRLPNVQLRDCSKYGTFVSKNVGLKKKVHELPNKETALHDGDLVSFGTGSATYKFCHVPLILFVCPTNKVDRSLAKKISSIGASIAHTLNVECTHVLVDQLTPLKKDLVDAVIAKKSCVLKTWLEFFAEKNISNEIPSCHSHIPTVSVEGASIRVADPKARENCLKGYTFVLESVHLYKFGDQLKSLLEVAGAKTISFQEFSSYSQGSDYGDDNRMVCVTPEGAACKPDFIKLLSSLQKVNEMGIINAALSGHLDLSILKSPCVLISSSCSTDETIVADSDTEVETATSPIASEALCGGNKVKYVKTEELDDGDDDSGTSLKRKDEGVEPTLDDISTSLHEIKHGKADISLETSIRSDTHATSFKDGTGGIQVKKDKVDDYGSGNSDIVYSQNLVVRYINTLTNRISAPNSSVPNFKRFRKPHTQSGNSFDNLVPFAKYPYKDSGYGNDETAEYVKEEKRRKQREAMADDLFNNQKAKKRGTAGSLHGMLTSTR 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01571 551 CDD FHA_NBN 3 114 - -
Vifa1g01571 551 MobiDBLite consensus disorder prediction 514 533 - -
Vifa1g01571 551 CDD BRCT 118 182 - -
Vifa1g01571 551 SMART FHA_2 24 80 IPR000253 GO:0005515
Vifa1g01571 551 PANTHER NIBRIN-RELATED 400 534 IPR040227 GO:0006302|GO:0007095|GO:0030870
Vifa1g01571 551 SUPERFAMILY SMAD/FHA domain 17 122 IPR008984 GO:0005515
Vifa1g01571 551 ProSiteProfiles Forkhead-associated (FHA) domain profile. 25 76 IPR000253 GO:0005515
Vifa1g01571 551 MobiDBLite consensus disorder prediction 514 551 - -
Vifa1g01571 551 FunFam Nibrin 5 113 - -
Vifa1g01571 551 MobiDBLite consensus disorder prediction 365 387 - -
Vifa1g01571 551 Gene3D - 4 114 - -
Vifa1g01571 551 Pfam FHA domain 25 104 IPR000253 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01571 K10867 - gmx:100783205 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01571 1 258772048 258779824 Vifa1g01571 1 258772048 258779824 ECH