Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01197 ATGCGTGTTACAGTGGATCTAGGGTTTTATTCTCTGCTCTTCGTTGTTTTAGTTTGTGTGGTTTTTCCGGTGATTGGTTTGGTTGTACGTTATACGTGGCGGCGGTCGGAGGAGAGGGCGGGGGAGATTAAGAGGCTGTTGATTCTCGCGGCGGAGGAGTCTGCTAGGGCGGAGCGTGAGGCGGCAGCTTCGTATCATTACGATGATGCCAATTCCAATTCGTATCAGTACGTTGCTGCAAATTCCAATTCGTATCAGTACGTTGCTGCAAATTCGTATCCAAACGGTGCCGTTTCAGCTTTGAATCCGAATTCGAATCGAAACGGAGATGTTTCGGTTGCCAAGAGCAGTCAATGTGTAGTGTGTTTCTCTCCCACCACTAACCGATGTGCAAGGTGCAAAGCTGTTTATTATTGTTCTGGTAAGTGCCAAATTCCACATTGGCATCAAGGTCACAAAGACAACTGCCATCCTCCCAGCGAAGCTCGCCACACTGATGATTTGGTAAGAGATGTTAAAAAGAAGGTAGCCGAGCCGGACTATAGTGGAATCAATGACGAGAAGTCTCGGATTGAAAGCGCAGAGGTTGCAAAAGTCTCGAAACCCCCATTGTCAGATATAAAACGTTCTAAAACCTCATGTGAAGGGAATGATACGGCAAAAGTTGATTCTCTTGTAGAGGAGAACATTGTAGACTCTAATTCTGAATTATCATGCCACTCTTTTTCTGGATTCTCTGCTTCCACTGGTGTTAATGAATCGTCTGATGATTCATCTGTTTGTGAGAGTATCATCTCAAATGAGAATGAGCGATCCGAGGGACATATTTCTACTGACCACATTTTTGACATCTCTGGCAACACATCAAATGGTAATTGCATTGGTGCAACCATCCCATTGTCACCTAAGTTTGCTCATTTGGTTGATTCTGCCAGACCTAGTTTTGGTAAAGAAGAGAGTAAGCTCACATCAAATGATAGTTCTGGTCTGATGGTGCAGAAAGGGGGAACAGCGGGGCCTTCTAAAGTGTCTTCTGGATTTTGGAATTGCACTCTTGATTTAAAAGGGACAGAAGATGACTGTCTTGGTGACCCTCTTCCATCTCACTCTAATGTTGGGAAAAATATGCAAAATGAAGGACCTGGATCTTCCGAGAATGAAGATCCTGATTCTTCACGTCGTGCAGATGCCTCAAGCATCCATAACTTGCACACTCTCGGCTCTAATGTATCGAATCATGTTGTGGTTAACCCCAGAAGTAGCTTGAGATCTGCTGTAACGAAGTTAGTTTCCAGACCTGAAGATGAGCATTTACATTACAGTTCAAAATGTATGAGTAATGTCACCCATTCCAATGCTGCTAATTCGTCTCAGACTACTAACTGTTCTCCAAATTCCAAGGATGGCCTTAACACATCTGCTATGAAAGTCATTGATCAGTTTAGAGGATCAGATTTGACCAATCATTTTCCAATAGATGTTGGGAGTGATGTTGCTGGAAAATACAGTGACAAGGGTCTTTTTCCATATGATCTGTTTGTCAAGCTTTATAACTGGAACAGAGTGGATTTCCAACCGTTTGGTCTTACAAATTGTGGAAACAGCTGTTTTGCAAATGCTGTACTCCAGTGCTTGGTACTTACTCCACCCTTGACAGCATATTTGCTTCAAGGACTTCATTCTAAATCATGTGTGAATAAAAAATGGTGTTTCACTTGTGAGTTTGAAAGTTTGATTTTAAAGTCAAAAGACACAAAATCTCCTCTCTCGCCTATAGGTATACTCTCTCAACTACAGAATATTGGAAGTCAACTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTAAGGTACGTGGTAGAAACAATGCAATCTGTCTGCGTTATGGAATGTGGGGTTGATGCATCAGACGCATTAAAAGAGCAAACTAATTTAGTTGGTCTTACATTTGGAGGCTACCTACGATCGAAGATTAAATGCATGAAATGTGGAGGGAAATCTGAGCGTCAAGAAAGGATGATGGATTTGACTGTTGAGATAGACGGGGAGATAACATCCCTGGAGGAGGCTCTTCGACAGTTTACAAGCACTGAGACTCTGGATGGAGAAAACAAGTACCACTGTGCCAGATGTAAATCTTATGAGAGGGCAAAAAAGCAAATGGCAGTTTCAGAGGCACCTAATGTTCTTACAATTGCATTGAAGAGATTTCGGTCTGGAAAATATGGGAAGCTCAATAAGCCAATTCGGTTTCCTGAAATACTTGACTTGGCACCTTTCATGAGTGGGTCTAGTGATTTGGCTATATACCGGCTGTACGGAGTCGTCGTACACTTGGATACCATGAATGCGGCTTTTTCAGGTCACTATGTGTCCTATGTGAAAAATTTCCAAAACAGTTGGTTCAAGGTTGATGACAGTGTGGTGACGCCTGTTGAATTGCAAACAGTCTTAACGAAAGGCGCCTACATGCTTTTGTATGCAAGGTGCTCACCTAGGGCCCCAAGATTAATCAGAGACATGATAGTGTCAGATTCAAAAGGCAAAGTCCATGGAAAAACCATCACAACGAAACACAAACATTCATATTCACATTCTGATTCTGCTAAATACATGACTAATTCAGTCTCTCCATATGATCTACCTGCCTTAGAAACTATCCATTCGAAGTTTCATCGCATGAAAAGTATCATGGAAGAAGACTCATCAAGTGATAATTCATCCCTCATCAGCAACAATTCTGATGAATGTTCTTGCAGCACAGATAGCACCGGTGATTCAACAGGTACCGACGAATTTGCGGATTATGTTTTTGGTAACTCAGGACGAGGCGGGAGTGTTACTTCCTCCACGTGTTCAAGGGGGGAAACGGACGGTCTTTTGTATAGGAGGAGAGCGGTTAGCGAGGGATGCGTTTCTCATTTGCATCATAATCATAATTTAAGTATAGAGCATAGGAAGTTAGATACAAGTAGGAGTAGTAATAGTTTTAGGGAGAGGGATTCTTTTGAGAGGGCAGGATCCAACCATTTTAGTTATATAAATTCTGGTGTATCATATAGAAAGGCAAGAGAAAGAACTGATTGA 3090 0.4214 MRVTVDLGFYSLLFVVLVCVVFPVIGLVVRYTWRRSEERAGEIKRLLILAAEESARAEREAAASYHYDDANSNSYQYVAANSNSYQYVAANSYPNGAVSALNPNSNRNGDVSVAKSSQCVVCFSPTTNRCARCKAVYYCSGKCQIPHWHQGHKDNCHPPSEARHTDDLVRDVKKKVAEPDYSGINDEKSRIESAEVAKVSKPPLSDIKRSKTSCEGNDTAKVDSLVEENIVDSNSELSCHSFSGFSASTGVNESSDDSSVCESIISNENERSEGHISTDHIFDISGNTSNGNCIGATIPLSPKFAHLVDSARPSFGKEESKLTSNDSSGLMVQKGGTAGPSKVSSGFWNCTLDLKGTEDDCLGDPLPSHSNVGKNMQNEGPGSSENEDPDSSRRADASSIHNLHTLGSNVSNHVVVNPRSSLRSAVTKLVSRPEDEHLHYSSKCMSNVTHSNAANSSQTTNCSPNSKDGLNTSAMKVIDQFRGSDLTNHFPIDVGSDVAGKYSDKGLFPYDLFVKLYNWNRVDFQPFGLTNCGNSCFANAVLQCLVLTPPLTAYLLQGLHSKSCVNKKWCFTCEFESLILKSKDTKSPLSPIGILSQLQNIGSQLGNGREEDAHEFLRYVVETMQSVCVMECGVDASDALKEQTNLVGLTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIDGEITSLEEALRQFTSTETLDGENKYHCARCKSYERAKKQMAVSEAPNVLTIALKRFRSGKYGKLNKPIRFPEILDLAPFMSGSSDLAIYRLYGVVVHLDTMNAAFSGHYVSYVKNFQNSWFKVDDSVVTPVELQTVLTKGAYMLLYARCSPRAPRLIRDMIVSDSKGKVHGKTITTKHKHSYSHSDSAKYMTNSVSPYDLPALETIHSKFHRMKSIMEEDSSSDNSSLISNNSDECSCSTDSTGDSTGTDEFADYVFGNSGRGGSVTSSTCSRGETDGLLYRRRAVSEGCVSHLHHNHNLSIEHRKLDTSRSSNSFRERDSFERAGSNHFSYINSGVSYRKARERTD 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01197 1029 ProSitePatterns Zinc finger MYND-type signature. 119 156 IPR002893 -
Vifa1g01197 1029 Gene3D Cysteine proteinases 521 840 - -
Vifa1g01197 1029 MobiDBLite consensus disorder prediction 361 396 - -
Vifa1g01197 1029 MobiDBLite consensus disorder prediction 317 342 - -
Vifa1g01197 1029 FunFam Ubiquitin carboxyl-terminal hydrolase 15 110 160 - -
Vifa1g01197 1029 ProSiteProfiles Zinc finger MYND-type profile. 119 156 IPR002893 -
Vifa1g01197 1029 Pfam MYND finger 119 156 IPR002893 -
Vifa1g01197 1029 MobiDBLite consensus disorder prediction 902 928 - -
Vifa1g01197 1029 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 527 831 IPR028889 -
Vifa1g01197 1029 FunFam Ubiquitin carboxyl-terminal hydrolase 15 521 839 - -
Vifa1g01197 1029 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 273 834 - -
Vifa1g01197 1029 MobiDBLite consensus disorder prediction 316 342 - -
Vifa1g01197 1029 Gene3D - 106 161 - -
Vifa1g01197 1029 MobiDBLite consensus disorder prediction 370 385 - -
Vifa1g01197 1029 SUPERFAMILY HIT/MYND zinc finger-like 116 159 - -
Vifa1g01197 1029 Pfam Ubiquitin carboxyl-terminal hydrolase 527 828 IPR001394 GO:0004843|GO:0016579
Vifa1g01197 1029 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 528 543 IPR018200 GO:0004843|GO:0006511
Vifa1g01197 1029 SUPERFAMILY Cysteine proteinases 524 834 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01197 Vifa-Chr1 194804181 194813160 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01197 507 835 Miscellaneous Gene Families AT4G31670 50.453 1.54e-116 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01197 K11855 - gmx:100782303 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01197 1 194804181 194813160 Vifa1g01197 1 194804181 194813160 ECH