Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01116 ATGGCCATGGCTCTTCGCAGACTCACCTCCACCATCAACAAACCAACTTCACCTTTCACCAACACAGCTTCTCTCCATCGCATGTCATCTTCGCTCTCCGCACAAGAGAATCACAAATCTAGCCCCGATTGGATTAAACAGCTCAACGATCCTCTTGAGGTGGTGGATCCTGAGATCGAAAATATAATTGAACTTGAAAAAGCTCGTCAATGGAAGGGACTCGAACTTATACCTTCAGAAAATTTTACGTCCTTGTCAGTGATGCAAGCAGTTGGATCTGTTATGACGAATAAATACAGTGAAGGTTATCCCGGTGCTAGATACTATGGTGGAAATGAGTACATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAACCTTTGGGTTGGATCCAGCACAATGGGGAGTCAATGTACAGTCGTTATCTGGATCTCCTTCCAATTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTCGATCTTCCCCATGGTGGGCATCTTTCACATGGATATCAGACTGACACTAAGAAGATATCAGCCGTATCTATATTCTTTGAAACAATGCCGTACAGATTGGACGAGAGCACTGGTTATATTGATTATGACCAGATGGAGAAAAGTGCTGCACTTTTTAGGCCAAAATTAATAGTTGCCGGTGCTAGTGCTTATGCCCGCCTTTATGATTATGCACGTATTCGCAAGGTCTGTGATAAACAGAAGGCAGTTATGTTAGCTGATATGGCCCACATCAGTGGATTAGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGGCCACGTGGGGCTATGATATTCTTCAGGAAGGGCGTGAAAGAGATAAACAAGAAAGGGCAGGAAGTGCTCTATGACTATGAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCTCACAATCATACTATTACAGGCCTAGCAGTTGCATTAAAGCAGGCTATGACACCAGAGTTCAAGAGTTATCAGAAACAAGTTCTTAGTAACTCCTCGACTTTTGCACAGAGTTTGTTAGAGAGAGGCTATGACCTTGTATCCGGCGGAACCGAGAACCATTTGGTGTTAGTGAACTTAAGAAACAAGGGCATTGACGGCTCGAGGGTTGAGAAGGTGTTAGAATCAGTTCATATAGCTGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCAGGAGGCATCAGAATGGGAACCCCTGCTCTCACATCGAGGGGTTTTGTTGAGGGTGATTTTAAAAAAGTAGCTGAATACTTTGACACGGCAGTCAAAATAGCCTTACAGATCAAGGAAAATTCTCAAGGCAAAAAGTTGAAGGATTTTGTGGAATCTATGCAGTCAGATGCACAAACTCAAACTCAAATTGCTAATCTTCGATGCGAAGTAGAAGATTATGCTAAGCAGTTTCCCACAATCGGTTTTGAGAAAGAGACAATGAAGTATAACAAGTGA 1545 0.4278 MAMALRRLTSTINKPTSPFTNTASLHRMSSSLSAQENHKSSPDWIKQLNDPLEVVDPEIENIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALETFGLDPAQWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKKGQEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKSYQKQVLSNSSTFAQSLLERGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEGDFKKVAEYFDTAVKIALQIKENSQGKKLKDFVESMQSDAQTQTQIANLRCEVEDYAKQFPTIGFEKETMKYNK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01116 514 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 275 291 IPR019798 GO:0030170
Vifa1g01116 514 Pfam Serine hydroxymethyltransferase 52 449 IPR039429 -
Vifa1g01116 514 Gene3D Aspartate Aminotransferase, domain 1 56 501 IPR015422 GO:0003824
Vifa1g01116 514 CDD SHMT 55 476 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vifa1g01116 514 FunFam Serine hydroxymethyltransferase 81 354 - -
Vifa1g01116 514 PIRSF SHMT 33 509 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vifa1g01116 514 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 38 507 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vifa1g01116 514 MobiDBLite consensus disorder prediction 7 41 - -
Vifa1g01116 514 Gene3D - 81 354 IPR015421 GO:0003824
Vifa1g01116 514 SUPERFAMILY PLP-dependent transferases 43 505 IPR015424 -
Vifa1g01116 514 MobiDBLite consensus disorder prediction 9 41 - -
Vifa1g01116 514 FunFam Serine hydroxymethyltransferase 342 502 - -
Vifa1g01116 514 Hamap Serine hydroxymethyltransferase [glyA]. 51 504 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01116 Vifa-Chr1 182491360 182497197 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01116 K00600 - gmx:100816213 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01116 1 182491360 182497197 Vifa1g01116 1 182491360 182497197 ECH