Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01085 ATGGCTGTTTCAACCAGTTTTTTCTCTGGCGGGAAATCAGAACCATTCTTCCTTAAACATTGTTCATCATCTTCTTCTTCTTTCTCTTATGTTACAACTCATTTATCATTTGATGGTAGAAACAAAAGGAGCCTTGTTCAGAGCCAGAAAGGTTCAAGTTCAACTATTCGCTGTGACGCTTCTTCGTCTGTCGATCCTCTACAACAGCTTAAAACTTCTGCTGCTGATAGATATACGAAGGAGAATAGCAGCCTTGTGATGATTGGGCTGAGTGTGCATACTACACCGGTGGAGTTGCGTGAGAAACTTGCTATACCAGAAGCTGAATGGCCAAGAGCCATTGGTGAGCTTTGTGGTTTGAATCATATTGAAGAAGCAGCTGTTCTTAGTACGTGTAACAGAATGGAGATTTATGTTGTTGCACTTTCTCAGCATCGTGGTATCAAAGAAGTCACTGAATGGATGTCAAATACAAGTGGCATACCTGCATCAGAGCTTTCACAGTATCTATTTCTGCTATACAACAAAGATGCAACCCAACACCTTTTTGAAGTATCAGCAGGACTTGATTCTCTTGTAATGGGAGAAGGTCAGATCCTTGCACAAGTCAAGCAAGTTGTGAAAGCAGGACAAGGAGTTAATGGATTTGGAAGAAACATCAGTGGATTATTCAAGCACGCAATCACCGTCGGCAAAAGAGTCCGAACCGAAACCAACATTTCGGCCGGAGCAGTTTCTGTGAGCTCGGCTGCGGTCGAGTTGGCACTGATGAAGTTACCTGATCAAGCCTCACATGGAAATGCAAGAATGCTAGTTATTGGAGCTGGCAAAATGGGGAAGCTTGTGATCAAGCATTTGGTTGCAAAAGGGTGTAATAAGATGGTAGTAGTTAATCGAACCGAAGAGAGAGTATCTGCGATCCGTGATGAAATAAACGATGTCGAGATAATCTACAAACCGTTTTCTGATATGCTCGAATGCGTAGGCGAAGCGGATGTAGTTTTCACAAGCACGGCATCAGAGAATCCTTTGATTTTAAAACAACATGTTAAGGAACTTCCTTTCGTAAGTGAAGAAATGGGACGAAAGCGCCTCTTCGTCGATATTTCTGTTCCGAGGAACGTAGGTTCGTGCGTCGATGACCTCGAATCAGTCAAAGTTTACAATGTCGACAACCTTAAAGAGGTAGTGGCTGCTAACAAAGAGGACAGACTAAGAAAAGCAATGGAAGCACAAGTGATCATCGGCGAAGAATCGGGCCAATTCGAAGCATGGAGAGACTCGTTAGAAACTGTTCCTACTATCAAGAAACTGAGAGCTTATGCTGAAAGATTAAGGATTGATGAGGTTGAGAAATGTTTAGGTAAAATGAGTGATGAGGATATAAATAAGAAGACACAAAAAGCAGTGGATGATCTTGGTAGAGGTATAGTGAATAAAATGCTTCATGGTCCAATGCAACATTTGAGATGTGATGGGAGTGATAGTAGGACTTTGAGTGAAACACTTGAGAATATGCATGCTTTGAATAGAATGTTTGGTCTTGAAACTGAGGTTTCTGTTTTGGAGCAGAATATTAGAGCTAAAGTGGAGCAAAAACCATAA 1605 0.4168 MAVSTSFFSGGKSEPFFLKHCSSSSSSFSYVTTHLSFDGRNKRSLVQSQKGSSSTIRCDASSSVDPLQQLKTSAADRYTKENSSLVMIGLSVHTTPVELREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGIKEVTEWMSNTSGIPASELSQYLFLLYNKDATQHLFEVSAGLDSLVMGEGQILAQVKQVVKAGQGVNGFGRNISGLFKHAITVGKRVRTETNISAGAVSVSSAAVELALMKLPDQASHGNARMLVIGAGKMGKLVIKHLVAKGCNKMVVVNRTEERVSAIRDEINDVEIIYKPFSDMLECVGEADVVFTSTASENPLILKQHVKELPFVSEEMGRKRLFVDISVPRNVGSCVDDLESVKVYNVDNLKEVVAANKEDRLRKAMEAQVIIGEESGQFEAWRDSLETVPTIKKLRAYAERLRIDEVEKCLGKMSDEDINKKTQKAVDDLGRGIVNKMLHGPMQHLRCDGSDSRTLSETLENMHALNRMFGLETEVSVLEQNIRAKVEQKP 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01085 534 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 243 404 IPR036291 -
Vifa1g01085 534 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 88 238 IPR015895 GO:0008883|GO:0033014|GO:0050661
Vifa1g01085 534 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 29 532 - -
Vifa1g01085 534 NCBIfam glutamyl-tRNA reductase 86 495 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vifa1g01085 534 FunFam Glutamyl-tRNA reductase 84 243 - -
Vifa1g01085 534 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 410 515 IPR015896 GO:0008883|GO:0033014|GO:0050661
Vifa1g01085 534 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 408 496 IPR036453 GO:0008883|GO:0033014|GO:0050661
Vifa1g01085 534 Pfam Shikimate / quinate 5-dehydrogenase 255 396 IPR006151 -
Vifa1g01085 534 Hamap Glutamyl-tRNA reductase [hemA]. 84 513 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vifa1g01085 534 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 84 240 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vifa1g01085 534 ProSitePatterns Glutamyl-tRNA reductase signature. 181 204 IPR018214 GO:0008883
Vifa1g01085 534 Gene3D - 244 397 - -
Vifa1g01085 534 Gene3D - 83 243 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vifa1g01085 534 CDD NAD_bind_Glutamyl_tRNA_reduct 85 408 - -
Vifa1g01085 534 FunFam Glutamyl-tRNA reductase 243 403 - -
Vifa1g01085 534 Coils Coil 297 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01085 Vifa-Chr1 178311953 178314526 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01085 K02492 - gmx:100815985 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01085 1 178311953 178314526 Vifa1g01085 1 178311953 178314526 ECH