Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01075 ATGGGAATGGAACCAATTTGTGGACAAGCTTATGGAGCAAAACAATGGAAGATACTTGGCTTAACACTTCAAAGAACAGTTCTTCTTCTTCTTTCAACTTCAATCCCTATCTCATTCATTTGGTCCAACATGAAAACAATCCTTTTGTTTTCAGGTCAAGACCAAGAAATTTCATCCATGGCTCAAACTTTTATACTTTACTCAATACCTGATCTTTTTCTTGTCTCATTTCTTCATCCTTTGAGAATCTATCTTAGGACTCAAGGAATCACATTGCCTTTGACATATTGTTCAGCTATTTCTGTTTTGCTTCATGTCCCTCTCAATTTTCTTTTAGTTGTTTATTTCGAAATGGGAATTGCGGGGGTATCGATAGCAATGGTTTTGACTAACTTGAACCTTGTTATTTTGTTGTCATCTTTTTTGTGGTTCTCTAGAGTTTATAAGGACTCGTGGATTTCGCCGAGCTTAGAATGTGTTAAAGGGTGGTCCTCGTTGCTTTCGCTCGCGATTCCTACTTGCGTTTCGGTTTGTCTCGAATGGTGGTGGTACGAGTTCATGATAATGATGTGTGGACTTTTGATTAACCCTAAAGCAACTATTGCTTCAATGGGAATACTCATTCAAACAACATCTTTGGTTTATGTTTTTCCATCGTCACTTAGTCTCGGAGTTTCCACAAGAATCGGGAACGAGTTAGGCGCGAATAGGCCACAGAAAGCAAGAATCTCAATGATAGTTTCGCTTTTCGTTGCTATGGTTTTAGGACTAGGAGCAATGCTATTCACAACATTGATGAGAAACCAATGGGGAAAATTCTTCACAAATGACAAAGAAATTCTTGAACTAACATCCATTGTGTTACCGATTGTTGGACTTTGTGAGCTTGGAAATTGTCCACAAACCACGGGTTGCGGCGTTCTTAGAGGAAGCGCGAGACCGACAATCGGTGCTAACATAAACTTGGGATCTTTTTACCTGGTTGGAATGCCGGTCGCCATCTTTTTAGGTTTTGTTGCTAAATTGGGATTTGCAGGGTTGTGGATTGGGTTACTTGCTGCTCAAGGCTCATGTGCTATGCTTATGTTGATTGTTCTTTGTAGAACTGATTGGAATATGGAAGTTCGAAGAGCTAAAGAACTCACAAAAGCTTCAACAATAAAAACTACTACTACTTGTGATGATGATGATGATGATAAATTACCTACATTTATTGAAACTAAGATGAAAAAGAATAATGTTCATGGTTGTCTTGAAGAAATTGTTATCACTCATGATGAAAAAGATCCACTTATCATAACTACTACTACTTCCAATTACATTGAAGATTAG 1332 0.3806 MGMEPICGQAYGAKQWKILGLTLQRTVLLLLSTSIPISFIWSNMKTILLFSGQDQEISSMAQTFILYSIPDLFLVSFLHPLRIYLRTQGITLPLTYCSAISVLLHVPLNFLLVVYFEMGIAGVSIAMVLTNLNLVILLSSFLWFSRVYKDSWISPSLECVKGWSSLLSLAIPTCVSVCLEWWWYEFMIMMCGLLINPKATIASMGILIQTTSLVYVFPSSLSLGVSTRIGNELGANRPQKARISMIVSLFVAMVLGLGAMLFTTLMRNQWGKFFTNDKEILELTSIVLPIVGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAIFLGFVAKLGFAGLWIGLLAAQGSCAMLMLIVLCRTDWNMEVRRAKELTKASTIKTTTTCDDDDDDKLPTFIETKMKKNNVHGCLEEIVITHDEKDPLIITTTTSNYIED 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01075 443 Pfam MatE 172 334 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g01075 443 Pfam MatE 1 111 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g01075 443 CDD MATE_eukaryotic 1 377 IPR045069 GO:0042910|GO:1990961
Vifa1g01075 443 NCBIfam MATE family efflux transporter 1 348 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g01075 443 PANTHER MULTIDRUG RESISTANCE PROTEIN 2 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01075 Vifa-Chr1 176379779 176381110 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01075 K03327 - gmx:100783792 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01075 1 176379779 176381110 Vifa1g01075 1 176379779 176381110 ECH