Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00887 ATGCCAACTATCTTGCTTAGGATTTTCCTTCTATACAACGTTGTCAATTCTTTTCTCATTTCTCTTGTACCTAAGAAACTTGTAACCTTCTTCCCCTTTTCTTGGTTCTCCTATCAAACCTTAACGAATCTCACCCAAAACAACAATAACACTACTACTACACTTTCATCGTCGATAAGAGGTCTTGTTATTACTGAGACAAGAACAATGGATCCAACCGAACTCAAGCGTGTTTTCCAAATGTTTGACCGTAATGATGATGGTCGGATAACAAAGAAAGAGTTGAACGATTCATTGGAGAATTTAGGAATTTTCATTCCTGACGTAGAGCTGAGTCAAATGATCGAGAAGATTGATGTGAACCGAGACGGGTGTGTGGATATTGAGGAGTTTAGAGAGCTGTACGAGTCGATTATGGATGAGCGTGTTGAAGAGGAGGAGGAGGATATGAGGGAAGCGTTCAATGTGTTTGATCAAAATGGTGATGGGTTTATTAGTGTTGATGAGTTGAGATCTGTTTTGGTGTCGTTGGGATTGAAACAGGGAAGAACTGTGGAAGATTGTAAGAAGATGATAGGGAAGGTTGATGTTGATGGAGATGGGTTGGTTGATTATAAGGAGTTTAAGCATATGATGAAGGGTGGTGGTTTTTCTGCTCTCAGTTAG 666 0.3994 MPTILLRIFLLYNVVNSFLISLVPKKLVTFFPFSWFSYQTLTNLTQNNNNTTTTLSSSIRGLVITETRTMDPTELKRVFQMFDRNDDGRITKKELNDSLENLGIFIPDVELSQMIEKIDVNRDGCVDIEEFRELYESIMDERVEEEEEDMREAFNVFDQNGDGFISVDELRSVLVSLGLKQGRTVEDCKKMIGKVDVDGDGLVDYKEFKHMMKGGGFSALS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00887 221 Pfam EF-hand domain pair 74 136 IPR002048 GO:0005509
Vifa1g00887 221 Pfam EF-hand domain pair 147 213 IPR002048 GO:0005509
Vifa1g00887 221 SMART efh_1 187 215 IPR002048 GO:0005509
Vifa1g00887 221 SMART efh_1 110 138 IPR002048 GO:0005509
Vifa1g00887 221 SMART efh_1 149 177 IPR002048 GO:0005509
Vifa1g00887 221 SMART efh_1 74 102 IPR002048 GO:0005509
Vifa1g00887 221 FunFam Calmodulin-like protein 3 70 139 - -
Vifa1g00887 221 FunFam calmodulin-like protein 3 143 216 - -
Vifa1g00887 221 Coils Coil 128 148 - -
Vifa1g00887 221 Gene3D - 138 215 - -
Vifa1g00887 221 ProSitePatterns EF-hand calcium-binding domain. 158 170 IPR018247 -
Vifa1g00887 221 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 144 213 - -
Vifa1g00887 221 ProSitePatterns EF-hand calcium-binding domain. 119 131 IPR018247 -
Vifa1g00887 221 ProSiteProfiles EF-hand calcium-binding domain profile. 183 218 IPR002048 GO:0005509
Vifa1g00887 221 SUPERFAMILY EF-hand 73 215 IPR011992 -
Vifa1g00887 221 CDD EFh 74 134 IPR002048 GO:0005509
Vifa1g00887 221 ProSitePatterns EF-hand calcium-binding domain. 196 208 IPR018247 -
Vifa1g00887 221 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Vifa1g00887 221 CDD EFh 153 213 IPR002048 GO:0005509
Vifa1g00887 221 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Vifa1g00887 221 Gene3D - 37 137 - -
Vifa1g00887 221 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Vifa1g00887 221 ProSiteProfiles EF-hand calcium-binding domain profile. 106 141 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00887 Vifa-Chr1 149853129 149853794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00887 5 219 EF-hand Containing Proteins AT2G43290 63.303 5.74e-95 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00887 K13448 - zju:107422102 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00887 1 149853129 149853794 Vifa1g00887 1 149853129 149853794 ECH
Vifa1g00887 1 149853129 149853794 Vifa6g00907 6 307131233 307131685 PCT