Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00858 ATGGCGAATCTTGTTCCCGGAGTGCTTTTGAAGCTTTTACAACACATGAATACAGATGTGAAGGTTGGTGGTGAACACAGATCATCCCTTTTACAGGTTGTAAGCATTGTTCCAGCTCTTGCAGGTGGTGAGCTTTTCCCAAATCAAGGTTTTTATCTGAAGGTTTCAGATTCATCTCATGCTACTTATGTTTCTTTGCCTGATGAACATGATGATTTGATTTTGAGTGATAAGATTCAATTGGGTCAGTTTGTTTTTGTTGATCGGTTTGAAGCTGGTTCTCCTGTTCCTGTGATTAGGGGTGTTAAGCCTGTTCCTGGTAGACACCCTTGTGTTGGTAGTCCTGAGGATATTGTTGCCACTCATGAGCTTTCATTTCTTGATAACAATGGTAGTGATACTAGGAGGAATAAGAATAATGTTGTTTCTTCTGAGAGTCCTAGGAATGTGTTTGGTAGCCATAGGAATGTGTTTGGTGTGAAGGAGAAAGAGAAGAAGGAGAGAGGGAGGTTGAGTTTTGGTGGTGTTATTGTTAAGGAGGAAGGGTTAGAGAAGAAGGAGAGACTGAGATTGAGTTTTGGTGGTGCTAGTAGTGTTAAGGAGGAAGGGTTAGAGAAGAAAAGAGGGTTTTTTGGTAGAGGTAGTAGTAAAAGTGAGTCTTTGAAAACAAAACCGGTGTTGAAGATTGATGTGAAGAGGGAATTGTTACCTCACCCGTTACCTAGAGTGAGGTCGGCGAGTTCGAAGTCGATTCCTTCTTCGCCTAGTAGTGTTTATTCATTGCCGAATTCTTTTGAGAAATTCTCTAATGGTGTTAAGCAGCAGAGGGCAAAGGCTCTAAGAAAGAGTTGGGAAGGAACTATGGAGATCAAGACTAAAGAGTCTTCCAAAATCAAGGGCACTGCTGCTAAGCCGGTAGTTCAAAGCTCGATTCCTAGGAGAAGCATGGCGACTGATAAGTTACCGTCTAGAGAGGTTAAAGCCCCGATAAAGCCCTCTAAGGAAGAACACAAGGCTCAAGTATCTATAAAGAAGGTGACTTCTAATGGAAATATAGAGGAACAAGAGAAATCAAGTAAGCAAAGGATTTCCTTTGTAAAGAAATCGGCAGAAGTTTCTAACAACGGATTACCCGGAAACATGGTCAAAGTTTCCCTAAGTACTAGAAAAGTGACAGATTCAAGTGTTCAATGGGCGTCACTCCCGTCATCTATTTCAAAGCTCGGAAAGGACGTAATGAAGCACAGAGATTCTGCACAGCTGGCTGCAATTGAGGCTATGCAAGAAGCCGCAGCTGCCGAGAGTTTGTTACAATGCTTGAGTATATATTCGGAGCTGACTAATTCTGCGAAGGAGCATAACCCACAGCCAGCAGTAGAGCAGTTTTTATCGCTTCATGCAAGCCTAAATAGTACCCGGACGATTGCAGAATCCTTATCTAAACCCATTCCAGATGGTTCATCTCCGGATTCCGAAAATAGCAAACTGGAAGAAGCACTAAAACAAAAATCAGATAGACAAAAACAAGCGGCTTCTTGGGTCCACGCAGCCCTGGCCACCAACCTGTCATCTTTCGCTGTTTATTCAAAAGAAGCTTCGAGTAATAATTCTCAAATTCAAAAGACTGCAGTTGGAATTCAACCCGCGTTAGTCCTACACAATTCAAGCGAAAATTCATCGTCAAAACTTCGTGTAAAATCTCGTCCGATAGTTCATTCCAAGCTTGTCTCACAAGGCATCATTCCTCGTAAATCGACCGATTCAGCAAATGGACACAAGCAACCAGTCCAACCACCCCCAGAGTGGATTAAAGGAAATAGTCTCGACGAGGTGGTTGGTTTGGCTGAAATGTTGCAGGTACAATCCCGAGACTGGTTTTTGGGATTCGTTGAAAGATTCTTGGACAGTGACGGCGACACTACCTTGTCGGATAATGGACAAATAGCAGGTATGCTCACTCAATTAAAGAGCGTAAACGATTGGTTAGACGAGATAGGATTGAGCAAAGACGAAGAAGAATCATTCCAGATATCAGCAGAGACAATTGACCGACTGAGGAAGAAGATATACGAATATCTTCTCACACACGTCGAATCCGCTGCAGCTGCACTTAGCGGCGGATCACAATCACAAGCATTGCCTCGGATTCAAACATCACATGTTAAAGCCAAAAGGTGA 2178 0.4293 MANLVPGVLLKLLQHMNTDVKVGGEHRSSLLQVVSIVPALAGGELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQFVFVDRFEAGSPVPVIRGVKPVPGRHPCVGSPEDIVATHELSFLDNNGSDTRRNKNNVVSSESPRNVFGSHRNVFGVKEKEKKERGRLSFGGVIVKEEGLEKKERLRLSFGGASSVKEEGLEKKRGFFGRGSSKSESLKTKPVLKIDVKRELLPHPLPRVRSASSKSIPSSPSSVYSLPNSFEKFSNGVKQQRAKALRKSWEGTMEIKTKESSKIKGTAAKPVVQSSIPRRSMATDKLPSREVKAPIKPSKEEHKAQVSIKKVTSNGNIEEQEKSSKQRISFVKKSAEVSNNGLPGNMVKVSLSTRKVTDSSVQWASLPSSISKLGKDVMKHRDSAQLAAIEAMQEAAAAESLLQCLSIYSELTNSAKEHNPQPAVEQFLSLHASLNSTRTIAESLSKPIPDGSSPDSENSKLEEALKQKSDRQKQAASWVHAALATNLSSFAVYSKEASSNNSQIQKTAVGIQPALVLHNSSENSSSKLRVKSRPIVHSKLVSQGIIPRKSTDSANGHKQPVQPPPEWIKGNSLDEVVGLAEMLQVQSRDWFLGFVERFLDSDGDTTLSDNGQIAGMLTQLKSVNDWLDEIGLSKDEEESFQISAETIDRLRKKIYEYLLTHVESAAAALSGGSQSQALPRIQTSHVKAKR 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00858 725 PANTHER EXPRESSED PROTEIN 1 705 IPR010341 -
Vifa1g00858 725 MobiDBLite consensus disorder prediction 491 505 - -
Vifa1g00858 725 Pfam Plant protein of unknown function (DUF936) 277 704 IPR010341 -
Vifa1g00858 725 Pfam Plant protein of unknown function (DUF936) 4 276 IPR010341 -
Vifa1g00858 725 MobiDBLite consensus disorder prediction 479 507 - -
Vifa1g00858 725 MobiDBLite consensus disorder prediction 583 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00858 Vifa-Chr1 146004977 146008038 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00858 - - cam:101502274 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00858 1 146004977 146008038 Vifa1g00858 1 146004977 146008038 ECH
Vifa1g00858 1 146004977 146008038 Vifa6g00888 6 304660690 304662796 PCT