Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00557 ATGTCTGTCTCTTCAGCTTCCTCCTCTCTCATTCCCACCAAGTCACTAATCCCAAACCCATCCGCCTCCTCCTCATTCCCAATCGGGCTCAAGCCCATCCCCACTCTCAAGCCCAACCACTCCCGCTCAATCCTCGCCGTCCATGCCGCCGAGCCCGCCAAAAACCCCGCGGTTGCCGAAAAGCCCACCAAACCCCAACCAACCACCATTCCCCGGAACATAAACTCCGGAAAATGGACAATCGACAGCTGGAAATCCAAGAAGGCTCTTCAACTTCCTGATTACCCTAACCAGGAAGAACTCCACGCTGTTCTCAAGACTCTCGATGATTTCCCTCCGATTGTCTTCGCCGGAGAAGCGAGAACTTTGGAGGAACATTTGGGAGATGCTGCTATGGGGAACGCGTTTCTTCTTCAAGGCGGTGATTGTGCCGAGAGCTTCAAAGAGTTTAATGCTAACAACATTCGTGATACTTTCAGAATTATCCTTCAGATGAGTGTTGTCATGATGTTCGGAGGTCAAGTTCCGGTCATTAAGGTGGGTAGAATGGCCGGGCAATTTGCGAAGCCGAGATCGGATTCCTTTGAGGAGAAGGATGGTGTTAAGCTTCCTAGTTACAGAGGGGATAACATCAACGGTGATGCCTTTGATTTGAAATCAAGGACACCGGATCCACAGAGAATGATTCGGGCTTATTGTCAAGCTGCAGCTACTCTGAATCTTCTCAGAGCCTTTGCTACTGGTGGTTATGCTGCTATGCAGAGGGTTACTCAGTGGAACTTGGATTTCACTGAACTTAGTGAACAAGGAGACAGGTACCGAGAGCTTGCTAATCGTGTTGACGAGGCCCTTGGATTCATGGCTGCTGCTGGTCTCACTGTCGACCATCCAATCATGAGAACAACTGATTTCTGGACTTCACACGAGTGCTTGTTGTTGCCATATGAACAATCACTCACTAGGTTGGATTCAACTTCTGGCCTCCATTATGACTGCTCAGCCCATATGATTTGGGTCGGTGAAAGGACCCGACAGCTGGATGGTGCTCATGTTGAGTTTCTTAGAGGAGTTGCTAATCCCTTGGGAATCAAGGTAAGTGACAAGATGGATCCAAATGAGCTTGTGAAACTGATTGAGATCTTGAATCCCCAAAACAAACCAGGGAGAATTACTGTAATCACTAGAATGGGAGCTGAAAATATGAGGGTGAAGCTTCCACATCTGATCCGGGCTGTGCGAAGAGCAGGACAAATTGTCACATGGGTCAGTGACCCTATGCATGGAAACACCATAAAGGCTCCATGTGGTCTCAAAACTCGTCCTTTCGATGCCATCAGGGCTGAAGTGAGGGCATTCTTCGATGTCCATGAGCAAGAAGGAAGCTTCCCGGGAGGAGTTCATCTAGAGATGACGGGTCAAAACGTGACAGAGTGCATTGGTGGGTCGAGAACTGTCACATTCGACGACCTTAGCTCACGCTACCACACACACTGCGATCCAAGACTCAATGCTTCTCAATCACTCGAGCTTGCTTTCATCATTGCTGAAAGGCTAAGAAAGAGTAGGATCAGATCTCAGCCTCCTCTCACCTCTCCTCTTTCCACTCTTTCCACTGGTCTACTCTGA 1626 0.4889 MSVSSASSSLIPTKSLIPNPSASSSFPIGLKPIPTLKPNHSRSILAVHAAEPAKNPAVAEKPTKPQPTTIPRNINSGKWTIDSWKSKKALQLPDYPNQEELHAVLKTLDDFPPIVFAGEARTLEEHLGDAAMGNAFLLQGGDCAESFKEFNANNIRDTFRIILQMSVVMMFGGQVPVIKVGRMAGQFAKPRSDSFEEKDGVKLPSYRGDNINGDAFDLKSRTPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLDFTELSEQGDRYRELANRVDEALGFMAAAGLTVDHPIMRTTDFWTSHECLLLPYEQSLTRLDSTSGLHYDCSAHMIWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHEQEGSFPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKSRIRSQPPLTSPLSTLSTGLL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00557 541 MobiDBLite consensus disorder prediction 52 75 - -
Vifa1g00557 541 Gene3D Aldolase class I 271 520 IPR013785 -
Vifa1g00557 541 NCBIfam 3-deoxy-7-phosphoheptulonate synthase class II 79 521 IPR002480 GO:0003849|GO:0009073
Vifa1g00557 541 Pfam Class-II DAHP synthetase family 79 515 IPR002480 GO:0003849|GO:0009073
Vifa1g00557 541 SUPERFAMILY Aldolase 71 519 - -
Vifa1g00557 541 FunFam Phospho-2-dehydro-3-deoxyheptonate aldolase 268 520 - -
Vifa1g00557 541 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 40 526 IPR002480 GO:0003849|GO:0009073
Vifa1g00557 541 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00557 Vifa-Chr1 95995214 95998611 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00557 K01626 - gmx:100797019 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00557 1 95995214 95998611 Vifa1g00557 1 95995214 95998611 ECH