Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00512 ATGTCCAGGCCTCTACATAGAGGTGTGTCTGGAACTCGTGTACCTGACAGCATCAATGATTTGTCATGGGACTCACAATCCAAAGATAAAACAGAAAAAGACGATTTTGAGAAAAGGGGTTCTTCAGATCACACTCCTTTAGGATTGAGGTCTCCTCTGAGTTTAGTTTTTATAGCTGTTGTTGCTCTTGTTGGATCTTTCTGGTGGACTTTGAATTTGTCATCTTCGTCAAGAGGTCGTGTTTATCATGGTTATAGGAGGCTCCAAGAGAAACTTGTTTCTGATTTGGTGGATATTGGTGAGATTTCTAGGGGCGCTTCAAGGTGGAAAGAATTGGAAACTTGTTCTTCTGAGTTGGAAAACTTTGTTCCTTGTTTTAATGTTTCTGATGGGAATGAGTTTGAAAGGAAATGTGAATATGAGCAGAGGCTAAATTGTTTGGTTCTGCCACCGGTTAATTACAAAGTTCCTCTTAGATGGCCTACTGGAAAAGATGTTATTTGGGTTGCTAATGTAAAAATCACTGCCCAAGAGGTTCTTTCTTCCGGAAGTTTGACAAAAAGGATGATGATGTTGGATGAAGAACAAATTTCATTTCGTTCAGCCTCTCATATGTTTGATGGAGTTGAAGACTACTCACATCAGATTGCTGAAATGATTGGACTTAGAAATGAATCTTCCTTCAGACAAGCTGGGATTCGAACGATACTAGACATAGGTTGTGGCTATGGTAGCTTTGGAGCACACCTCTTTGACAGTCAACTTTTGACTTTGTGCATTGCAAATTATGAGCCTTCTGGTAGTCAAGTTCAGCTTACTCTCGAGCGGGGTCTTCCTGCTATGATTGCTTCTTTCACTTCAAAACAATTGCCTTATCCGTCTCTGTCCTTCGATATGTTACATTGTGCAAGATGTGGCATTGATTGGGACCTGAAAGATGGCAATCTCTTGATTGAAGTAGATAGACTTTTAAGACCGGGTGGATACTTTGTCTGGACATCACCACTTACCAATGCTCGTAACAAGGAGAATCAGAAAAGGTGGAAGTTTGTGCACGACTTCACAGAAAATCTCTGCTGGGAAATGTTATCGCAGCAAGATGAAACTGTTGTATGGAAGAAAGCAAGTAAAAAGAGTTGCTATACTAAAAGAAAGCCTGGTTCTCGCCCTTTGTGTGGTAGAGGTCTTGATGTGGAGTCTCCATATTATCGCGAACTGCAAAACTGCATAGGAGGAACGCAGAGCAGCCGTTGGGTTTCGATTGAAAAAAGGGAAAAATGGCCTTCTCAGGCAAATTTGAACAAGAACGGGCTAGCTATACATGGATTGCTGCCTGATGAATTTGCTGAGGATTCAGACAGCTGGAAATCAGCTGTTCAAAATTATTGGTCACTCCTCTCGCCTCTAATATTTTCTGATCATCCAAAGAGGCCAGGTGACGAGGACCCTTCGCCACCTTACAACATGTTCAGAAATATTCTAGACATGAATGCTAATTTCGGTGGCTTTAACTATGCATTATTGCAAGCAAGAAAGTCTGTGTGGGTAATGAATGCTGTCCCAATAAGTGGACTCAACTATCTTCCCTTGATCCAGGACCGAGGTTTTGTTGGCGTTTTGCATGATTGGTGTGATGCTTTTCCGACATACCCAAGAACCTATGACTTGGTTCATGCAGCAGGGCTTCTATCCCTTGAATTTTCCCATCCGCGCAAGTGCACTATGCTCGACTTGTTCATTGAAATTGACAGGTTACTTCGCCCTGAGGGTTGGTTTATAATTCGTGACACAGTTCCCTTGGTAGAATCAGCTAGAGCTTTAACAACACAGCTGAAATGGGAAGCAAGAGTTATAGAAATCGAAAGTAACAGCGAGGAGAAACTTCTGATATGCCAGAAACCGTTTTTTAAGAAACATGCAAGCTAA 1926 0.418 MSRPLHRGVSGTRVPDSINDLSWDSQSKDKTEKDDFEKRGSSDHTPLGLRSPLSLVFIAVVALVGSFWWTLNLSSSSRGRVYHGYRRLQEKLVSDLVDIGEISRGASRWKELETCSSELENFVPCFNVSDGNEFERKCEYEQRLNCLVLPPVNYKVPLRWPTGKDVIWVANVKITAQEVLSSGSLTKRMMMLDEEQISFRSASHMFDGVEDYSHQIAEMIGLRNESSFRQAGIRTILDIGCGYGSFGAHLFDSQLLTLCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGIDWDLKDGNLLIEVDRLLRPGGYFVWTSPLTNARNKENQKRWKFVHDFTENLCWEMLSQQDETVVWKKASKKSCYTKRKPGSRPLCGRGLDVESPYYRELQNCIGGTQSSRWVSIEKREKWPSQANLNKNGLAIHGLLPDEFAEDSDSWKSAVQNYWSLLSPLIFSDHPKRPGDEDPSPPYNMFRNILDMNANFGGFNYALLQARKSVWVMNAVPISGLNYLPLIQDRGFVGVLHDWCDAFPTYPRTYDLVHAAGLLSLEFSHPRKCTMLDLFIEIDRLLRPEGWFIIRDTVPLVESARALTTQLKWEARVIEIESNSEEKLLICQKPFFKKHAS 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00512 641 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 43 636 IPR004159 GO:0008168
Vifa1g00512 641 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 127 633 IPR004159 GO:0008168
Vifa1g00512 641 FunFam probable pectin methyltransferase QUA2 195 375 - -
Vifa1g00512 641 MobiDBLite consensus disorder prediction 1 43 - -
Vifa1g00512 641 MobiDBLite consensus disorder prediction 23 43 - -
Vifa1g00512 641 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 230 375 IPR029063 -
Vifa1g00512 641 Gene3D Vaccinia Virus protein VP39 190 374 IPR029063 -
Vifa1g00512 641 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 450 600 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00512 Vifa-Chr1 85420898 85424942 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00512 K23870 - gmx:100805992 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00512 1 85420898 85424942 Vifa1g00512 1 85420898 85424942 ECH