Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00500 ATGTCAAGTGGTGGATGCAGCATAGTTTGGTTCAGAAGAGATCTGAGGGTAGAGGATAACCCTGCACTTGCAGCAGGTGTTAGAGCAGGTGCTGTGGTTGGTGTTTTCATATGGGCACCTGAGGAAGAAGGACAATATTATCCTGGTAGAGTTTCAAGATGGTGGCTGAAGAACAGTTTGTCTCATCTTGATTCATCTTTGAGGAATCTTGGTACTCCTCTTGTTACCAAAAGATCAACTGATAGTATTTCTTCTTTGCTTCAAGTTGTTAAGTCCACTGGAGCCACTCAAATCTTTTTCAACCATTTATATGATCCGTTGTCACTGGTGAGGGATCATAGAGCGAAGGAAATTTTAACGGCTCAAGGAATTACGGTACGATCGTACAACTCGGATTTATTGTATGAACCATGGGATGTGAATGATGAACATGGCCAACCATTCACAACTTTTGATTCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGAATTATTCCAGGTGATGTATCAAGATGTCCTTCTGATACATTGGTGTTTGAAGATGAATTAGAGAAATCAAGCAACGCGCTTCTTGCTCGAGCGTGGTCACCAGGGTGGAGCAATGCGAACAAGGCATTGACGACATTTATAAACGGTCCACTGATCGAGTACTCTGTGAATCGTAGGAAAGCAGACAGCGCCACAACCTCATTCCTCTCCCCACATTTGCATTTTGGAGAAGTTAGTGTCAAGAAAGTATTCCATCTCGTCCGAATTAAGCAAGTGTTTTGGGCGAATGAAGGAAACAAAGCCGGCGAAGAAAGTGTTAACTTGTTTCTCAAGTCAATTGGTCTTCGAGAGTATTCAAGGTACATCAGTTTCAACCACCCGAATAGTCACGAAAGGCCTCTTCTTGGACACCTTAAGTTTTTCCCTTGGGTGGTCGACGAAGGATATTTTAAGGCTTGGAGACAAGGAAGAACGGGTTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCTACTGGTTGGCTTCATGATCGAATTCGCGTTGTCGTTTCGAGTTTCTTTGTTAAAGTTTTGCAGCTTCCTTGGAGATGGGGGATGAAATATTTTTGGGATACCCTTTTGGACGCTGATCTTGAAAGTGATGCTCTTGGCTGGCAGTATATATCTGGTACTTTACCCGACGGTCGTGAGTTCGACAGAATTGATAATCCACAGTTTGAGGGATACAAATGCGATCCAAATGGAGAATATGTGCGACGCTGGCTACCGGAACTTGCAAGACTACCGACTGAATGGATACATCATCCTTGGAATGCACCAGAATCAGTACTCCAAGCTGCAGAAGCAGCTTCAAGAACTGCAGCCGAAAACGGAACCGAAGAAGGTCTTGGAGACTCTACTGAATCCGCCCCTATTGCTTTTCCTCAAGACATACAAATGGAGGAAAGACACGAACCTGTTAGGAACAATCCGCTTCACGGTACTCGGCGCTACCAGGATCAAATGGTACCAAGTATGACTTATTCTAGAGTGAGAGCGGAAGACGAAGAAACTTCTTCGGTTCGAAACTCAGCAGGAGACAGCAGAGCTGAAGTGCCAACAAATGCAAACACACGGCAAAATGGACGAGAACCAATGGACCAAGGAATGTTGCAGAATGTAAATAGAAACACTAGACAACGTCGTAATAATACTACAACTACATTTTGGCTGAGAAATGCAGCAGAAGATTCAACAGCAGAATCTTCGAGTAGTATGAGAAGAGAAAGAGACGGAGGTGTAGTTCCGGAGTGGTCGCCACAGGCTTCTAACTTCTCAGATCAATTTGTAGATGATGAAAATGGTATAGGAGCCACTTCACCTTACTTGCAGAGGCATCCACAGTCTCACCAAATGATGAGTTGGACACGCCTACCTCAAACTGGATAA 1953 0.4434 MSSGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLSHLDSSLRNLGTPLVTKRSTDSISSLLQVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLPPKRIIPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPNSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAEAASRTAAENGTEEGLGDSTESAPIAFPQDIQMEERHEPVRNNPLHGTRRYQDQMVPSMTYSRVRAEDEETSSVRNSAGDSRAEVPTNANTRQNGREPMDQGMLQNVNRNTRQRRNNTTTTFWLRNAAEDSTAESSSSMRRERDGGVVPEWSPQASNFSDQFVDDENGIGATSPYLQRHPQSHQMMSWTRLPQTG 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00500 650 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Vifa1g00500 650 PANTHER CRYPTOCHROME 6 457 IPR002081 -
Vifa1g00500 650 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Vifa1g00500 650 Pfam Blue/Ultraviolet sensing protein C terminal 478 595 IPR020978 -
Vifa1g00500 650 NCBIfam cryptochrome photoreceptor 6 456 IPR014134 GO:0009785|GO:0009882
Vifa1g00500 650 PRINTS DNA photolyase signature 332 348 IPR002081 -
Vifa1g00500 650 PRINTS DNA photolyase signature 391 405 IPR002081 -
Vifa1g00500 650 PRINTS DNA photolyase signature 352 370 IPR002081 -
Vifa1g00500 650 MobiDBLite consensus disorder prediction 458 478 - -
Vifa1g00500 650 MobiDBLite consensus disorder prediction 531 589 - -
Vifa1g00500 650 Gene3D - 134 293 - -
Vifa1g00500 650 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Vifa1g00500 650 Gene3D HUPs 8 206 IPR014729 -
Vifa1g00500 650 MobiDBLite consensus disorder prediction 518 650 - -
Vifa1g00500 650 Pfam FAD binding domain of DNA photolyase 283 459 IPR005101 -
Vifa1g00500 650 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 456 IPR036134 -
Vifa1g00500 650 Pfam DNA photolyase 7 163 IPR006050 -
Vifa1g00500 650 MobiDBLite consensus disorder prediction 629 650 - -
Vifa1g00500 650 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Vifa1g00500 650 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 523 - -
Vifa1g00500 650 FunFam Deoxyribodipyrimidine photo-lyase 301 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00500 Vifa-Chr1 83670053 83674652 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00500 K12118 - gmx:100786551 1149.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00500 1 83670053 83674652 Vifa1g00500 1 83670053 83674652 ECH