Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00497 ATGAAGAAGCTAGCATTTCCAATCTCCACGAGCCTCGACAAGTTCAAATCGCTGTACGGCACCACATCGGGAACTGGGAAGCCGTTATCGTCGCTCTCCGCGCGTCAAACTTCCGATTCCGTTTCGTCGGGAAGTTTCGCGAATCTGAAGCTAACCGCAGAGAAATTGGTGAAAGAGCAAGCATCGGTGAAGACTGATCTTGATATTGCGAATACTAAGCTAAAGAAATCTCTGGAGCATATTCGTGCATTAGAAGAAAAATTGCAGAATGCCTTCAACGATAATGCGAAGCTCAAAGTGAAGCAGAAGGAAGATGAGAAACTATGGAAAGGACTTGAATCTAAGTTCTCGTCGACTAAGACTCTGTGCGATCAGCTTACTGAGACTCTACAACAGTTGGCTGGCATAGTTCAGGATGCTGAGAAAGATAAGGAAACATTGGAAAATAAACTCTCAGCAAGTTCAGAAGCTCTTGAGAGTTTGAACAAACAGATGGAGGGTTTGTCTTTGAAGCTAGATTCTACACAGGAAACAATAAAATCTCGTGATGATGAGCTAGAGAAGCTAAAGTTCTCTGCAGAAGAAAGGGAGAAGTTTCACAGCGATGAAAAGTGCAGAGCTGCCAATGTTATACAAGAGAAAGATACCATGATAAAGAGTTTAGAAGACATGTTAACTTCTAGTAGATTGGATGCGGAGACTTTGAACTCAAAGGTGGGAGAGCTTCACCTTCAACTAAAAGTCAAAGATGAAGAAATTACACATCACATAGCCTGTCAACAGAAATTGGATAAAGAAAAAAGTGATCTTCAATTATGCAATGCTGATCTTACTGAAAAGCTTGGCAAGTCACTTCAGGAAATCAAAAATCTTGAAGGATCACTTCAGTCGATGGCTACACATTTGTTGAATTTAGACAAAGAAAGCTTGAACCTTGTGAGCAAGTTTAACGAAATGAACTCTCTCTATACTTCTTGCTTCACATTGGTCCAGCATGAAAGAGACGCTTTCTCGAAGCATGCTCAAAACCAGTACGATGAGCTTCATAATAAGTTCTTGATCTTGTCATCCGAAAAAGATGGAATTCATATGACAAATCAAGAGCTAAGCAATAGTTTGAATGATCTTCGCAAAGTCCAAGAGTCTACTTTAGCACAGTATGCAGAGGATTGTCGATTGTCTGCAGAGAAAATTCAGTGTTTGGAGTTAGAAGCGGAAGATTCAATCTCAAAGAAGGCAGAAGCAGAAGCAACTATTTCCAAATTAGAGGAGAAAGCTGAAATTCTGATAGAGAGTGTTAGATCATCGGAGAACCAAATGCAAGGTTTACTACTCAAAATTTCAGCTTTAGAGACTGAAAGCAAAGAAAATATGGAAAGAATGCAGGCAGACATATTGAAGAAGTCAGAGGAAATTGATACTCTGCAAAAGGAGAGGATAAAAGTAGAGGAACATGCAGATTCTTTTGACAAAGAAGCCATACAACTGCGTAAAGTCTTAGAGGAAAAAGAACTATGCATTTTGCACCATAAGGAACAGGAAAAAAATCTGGAAGATCAAATCACAGAGAATCGGTTGTTATTAACTGCTGCTGAAAGTAAACTTACAGAAGCTAGAAATCAATATGATCAAATGGTAGAAAACAAGAAGTTGGAATTGTCAAAGCATTTAAAAGAAATATCTCAGAGAAATGATCAGGCTATTAATGACATTAAAAGGAAGTATGAAGTAGAGAAAAAGGAAATTGTCAACATGGAAAAAGACAAGGCTGACAAGGCTATTGCAGAAATTGAGGGAAGGCGTGACCAAAAACTTGCAGAATGCAAAGAAGAATCAAGGAAGCAGTTGATGCAAATTCAGGAGGAACACACTAAGCTGGTAACTCATATGCAGCAGGAACATGATAAGAGGCAACTATGCCTGCAAGCTGAACACAGTGAACAGTTAAAGCGTACCCAACTGCAGGCTGAAAATGAACTAAGAGAGAAAACAACGTTTATGAGGAAGGACCATGAAGCTCAGATTAAAGCATTGAGGTGTGAACTTGAAGATGAGTGTCGGAAGCTGGAAGAGGAATTGCATCTCCAGAAATCCAAAGAAGACAGGCAAAGGGCTTTGCTGCAGCTGCAATGGAAAGTGATGAGTGACAAGCCAAAAGAAGACCAAGAAGTTAATTCAAAACAGGAATACTCTGTCTCATCGATTAAGAGAAGGAGTTCTTTTGGTGGGAAAGTGAGTCAGCACGAAATAGAATCTCCTTACTTAGAAGAAACAGAAGCACCAGTGCCTAAGTTGTTGAAGAAAGTGGAGAACGTAAAAGCAGGAAATGCAGGAGGCATTCCTAAGCATCATAGAAAGGTAACTCGCCGTGAATATGAAGTTGAGACTTCTAATGGAAGAACAATTACAAAGAAAAGGAAAACAAGAAGTACTGTCTTGTTTGAGGATCCAAGAAAACAAAAGATAAATACACCAAAAACAAATACCCCTAGAACTGTTGTTAAGAGTATGAGGGCTGAAGGCCATCCCCGTCCTTCAACTATTGGTGATTTGTTTTCAGAAGGATCTCTAAATCCATATGCAGATGATCCTTATGCATTTGATTAG 2607 0.3951 MKKLAFPISTSLDKFKSLYGTTSGTGKPLSSLSARQTSDSVSSGSFANLKLTAEKLVKEQASVKTDLDIANTKLKKSLEHIRALEEKLQNAFNDNAKLKVKQKEDEKLWKGLESKFSSTKTLCDQLTETLQQLAGIVQDAEKDKETLENKLSASSEALESLNKQMEGLSLKLDSTQETIKSRDDELEKLKFSAEEREKFHSDEKCRAANVIQEKDTMIKSLEDMLTSSRLDAETLNSKVGELHLQLKVKDEEITHHIACQQKLDKEKSDLQLCNADLTEKLGKSLQEIKNLEGSLQSMATHLLNLDKESLNLVSKFNEMNSLYTSCFTLVQHERDAFSKHAQNQYDELHNKFLILSSEKDGIHMTNQELSNSLNDLRKVQESTLAQYAEDCRLSAEKIQCLELEAEDSISKKAEAEATISKLEEKAEILIESVRSSENQMQGLLLKISALETESKENMERMQADILKKSEEIDTLQKERIKVEEHADSFDKEAIQLRKVLEEKELCILHHKEQEKNLEDQITENRLLLTAAESKLTEARNQYDQMVENKKLELSKHLKEISQRNDQAINDIKRKYEVEKKEIVNMEKDKADKAIAEIEGRRDQKLAECKEESRKQLMQIQEEHTKLVTHMQQEHDKRQLCLQAEHSEQLKRTQLQAENELREKTTFMRKDHEAQIKALRCELEDECRKLEEELHLQKSKEDRQRALLQLQWKVMSDKPKEDQEVNSKQEYSVSSIKRRSSFGGKVSQHEIESPYLEETEAPVPKLLKKVENVKAGNAGGIPKHHRKVTRREYEVETSNGRTITKKRKTRSTVLFEDPRKQKINTPKTNTPRTVVKSMRAEGHPRPSTIGDLFSEGSLNPYADDPYAFD 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00497 868 Coils Coil 274 294 - -
Vifa1g00497 868 Coils Coil 668 688 - -
Vifa1g00497 868 Coils Coil 458 492 - -
Vifa1g00497 868 Coils Coil 528 548 - -
Vifa1g00497 868 Coils Coil 568 588 - -
Vifa1g00497 868 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 34 815 - -
Vifa1g00497 868 Coils Coil 67 101 - -
Vifa1g00497 868 MobiDBLite consensus disorder prediction 775 868 - -
Vifa1g00497 868 MobiDBLite consensus disorder prediction 786 822 - -
Vifa1g00497 868 Coils Coil 642 662 - -
Vifa1g00497 868 Coils Coil 398 453 - -
Vifa1g00497 868 Coils Coil 594 614 - -
Vifa1g00497 868 Coils Coil 123 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00497 Vifa-Chr1 83245985 83255210 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00497 - - gmx:100788684 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00497 1 83245985 83255210 Vifa1g00497 1 83245985 83255210 ECH