Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00398 ATGACAAACTCTAGGATTTTGAACATCAAGATATGGTTTGTTAGTTTGATTATGTTGTTTGCTATGACACATGGGAGAGGAATTAATTCAGAGTTTAGAGTGAAAGCAGTTAGTCTTGGTGGTTGGTTGGTTACTGAAGGTTGGATCAAACCTTCTCTCTTTGATGCCATTCCAAATAAAGACTTCTTGGATGGGACTGGTCTTCAATTCAAATCAGTGACAACGAGGAAATATCTATGTGCAGAATCTGGAGGAGGAACTATCCTTGTTGCAAACCGCACAAGTGCTTCAAGTTGGGAAACATTTAGATTGTGGAGAATAAACGAGGAAACTTTCAGATTTAGAGTGTTTAACAAGCAATTTGTGGGCCTAGATGAAATCAATGCTGTTGCAGTTACCAATTCTTCCACTGAGTCTGAAACTTTCCATATTGTTAAGGAAAATGACAATTCAACCCTTGTTCGAATTAAAGCATCCAATGGATACTACTTGCAGGCAAAATCAGAAGAGTTGGTGACAATTGATGTTTCAGAGGTTAGAGGATGGGAATACAATGACCCAACTGTTTTTGAATTGACAATTTCTGCAAGATTGCAAGGTGATTTCCAAATTGCAAATGGTTATGGCCCTACAAAAGCTGCACAAGTTATGAAGGAGCATTGGAGTACTTTTATAGTTGAAGATGATTTCAAGTTCATAGCCAGTAATGGATTAAATGCACTTAGAATTCCAGTGGGCTGGTGGATAGCAAGTGATCCAACTCCACCATGGCCATACGTTGGAGGTTCATTGCACTCACTAGACAATGCTTTTTCATGGGCCCAAAAATATGGATTGAAAATCATTATTGATCTTCATGCTGCACCTGGTTCTCAAAATGGTTTTCAACATAGCTCGACAAGAGACGGATCACAAGAATGGGGAAAATCAGATGAAAACATTCAACAAACAGTTGATGTTATAAGTTTCCTAACTGCAAGGTATGCAAGAAGCTCTAGTTTATATGCAGTTGAGCTCTTAAACGAGCCGCTCTCTCCTGGTGTGACACTTGAGAGCTTGAAGAAGTATTATAAAGATGGTTATGACGTGGTGCGCAAACACTCGACCACGACTTATGTGGTTATGTCGAATAGACTTGGACCATCAGAGCCAAAGGAACTCTTTCCTCTTGCTAATGGTTTTACGCGATCTGTGATTGATGTCCACTACTACAACATTTTCAATGATTTGTTTGAAAACATGACTGCGCAACAAAACATTGATTTTATTTACAACAACCGCTCATCAGATTTGAACTTGATTACAACATCAAATGGTCCTCTTACTTTTGTTGGTGAATGGGTTTCTGATTGGCGAGTTAAGAATGCTACAAAAGAAGACTTCCTGAGATTTGGCAAGGCCCAAATGGATGTTTTCGGTCGAGCAACATTTGGTTGGGCTTATTGGGCTTTTAAGAATGCAAACCAGCATTGGAGTCTTGAGTGGATGATTAATAACGGTTACATAAAGCTTTAG 1515 0.3908 MTNSRILNIKIWFVSLIMLFAMTHGRGINSEFRVKAVSLGGWLVTEGWIKPSLFDAIPNKDFLDGTGLQFKSVTTRKYLCAESGGGTILVANRTSASSWETFRLWRINEETFRFRVFNKQFVGLDEINAVAVTNSSTESETFHIVKENDNSTLVRIKASNGYYLQAKSEELVTIDVSEVRGWEYNDPTVFELTISARLQGDFQIANGYGPTKAAQVMKEHWSTFIVEDDFKFIASNGLNALRIPVGWWIASDPTPPWPYVGGSLHSLDNAFSWAQKYGLKIIIDLHAAPGSQNGFQHSSTRDGSQEWGKSDENIQQTVDVISFLTARYARSSSLYAVELLNEPLSPGVTLESLKKYYKDGYDVVRKHSTTTYVVMSNRLGPSEPKELFPLANGFTRSVIDVHYYNIFNDLFENMTAQQNIDFIYNNRSSDLNLITTSNGPLTFVGEWVSDWRVKNATKEDFLRFGKAQMDVFGRATFGWAYWAFKNANQHWSLEWMINNGYIKL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00398 504 Pfam Cellulase (glycosyl hydrolase family 5) 216 487 IPR001547 GO:0004553|GO:0071704
Vifa1g00398 504 Gene3D - 44 182 - -
Vifa1g00398 504 Gene3D Glycosidases 183 504 - -
Vifa1g00398 504 FunFam Glucan 1,3-beta-glucosidase A 45 183 - -
Vifa1g00398 504 PANTHER FASCIN 29 504 IPR010431 GO:0007015|GO:0051015
Vifa1g00398 504 SUPERFAMILY Actin-crosslinking proteins 68 184 IPR008999 -
Vifa1g00398 504 SUPERFAMILY (Trans)glycosidases 32 502 IPR017853 -
Vifa1g00398 504 FunFam Glucan 1,3-beta-glucosidase A 186 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00398 Vifa-Chr1 63310002 63312518 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00398 - - gmx:100794312 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00398 1 63310002 63312518 Vifa1g00398 1 63310002 63312518 ECH