Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00274 ATGCCTCCTCTTCCGTCCTCCATTTTGGCGAGATCCGAACTGTTCTCCCGACCTGCAAGCCACATCGTCAACCACAGTATCTCCAGCGGCGGAAGTCAGCGGCACGAGCAACAGCAGTTGGCGGTGATTCCGACGGCGGTTGATGTGAGGATCAACGACCTGGTCGGGAACGGAATATCAGGAATACTTCAGAAGTGGGTGAACTACGGCAAAGGATGGAGGCCTCGGTGGTTCGTTCTACAAGACGGCGTTCTCTCCTATTACAAGATTCACGGACCTGATAAGATCGTGATCAATCCAGAAACCGAGAAGGGATTCAAAATCATCGGTGACGAGTCCATGCGTATCATCTCTCGCAATAGAATTTCTCACTACTCGCAACATTGTCGAAAGCCTTTTGGTGAAATCCATCTTCAGGTTTCAACTATTCGAGAGAGCAGATCGGATGAAAAACGGTTTTCCATTTTCACTGGGACAAAGACACTGCACTTAAGGGCTGAGACCCGTGAGGATCGGGTGGCATGGGTGGAGGCCTTGTATGCGGTCAAAGATATGTTTCCTCGGATGTCTAACTGTGAGCTGATGGCTCCTGTGAACAATTTGGCCATTTCAACTGAAAAGTTGAGGCACCGGCTTATGGAAGAAGGTGTTAGTGAGGCGGCCATTCAGGACAGTGAGCAAATTATGAGAAATGAGTATGCAGCTCTACAAAGCCAGCTTTTGCTATTTAAGCAGAAACAGTTGGCTCTGATTGATAATTTACGCCAATTGGAGACAGAGAAAGTTGACCTGGAAAACACTGTTGTTGATGAGAGCCAAAGACAAAGACAAGGGAATGATCAAGATGCTTCCTCTATATTGGGGCAGGAAAAGTTTAGTGAAGCAAGTGCATGTGGGTCTGAGGATGATAATGAGAGAAATGACGCAGCAGACGAAGAAACAGATGATGACGATGATGCCGCCTTTTTTGATACACATGATTTTCTATCATCATCCGGTTCTTTTAAAAGTAATGAATCTGATTTTAGGGCTTCATCCTTTTCTTCAGATGATGAAGGACTCTCGGCAGTTGGATTTGAGGAGGATGCAGATCCTTCTATTAGAACTGTTGGGACCAACTACCCTCGTGTTAAGCGGCGTAAAAAATTGCCTGAACCTGCTGAAAAAGAGAAAGGCGTGAGTCTTTGGTCATTGATTAAGGATAATATTGGGAAGGATCTAACTAAAGTATGTCTCCCTGTTTATTTTAATGAACCTCTCTCCTCTCTTCAAAAATGCTGTGAAGAAATGGAGTACTCATATCTCCTTGACCGAGCTTATGAATGGGGAAGAAGAGGCAATACCCTTATGAGGATTCTCAATGTTGCTGCTTTTGCTGTATCTGCCTATGCTTCAACTGATGGGAAAATTTGCAAACCGTTTAATCCATTACTGGGGGAGACATATGAGGCTGACTTTCCAGATAGAGGCTTTCGTTTCATTTCAGAGAAGGTCAGTCACCACCCTACCATAGTTGCGTGTCACTGTGAGGGTACAGGCTGGAAATTTTGGGCAGATAGCAACTTAAAGAGCAAATTTTGGGGCCGATCAATTCAGCTCGATCCTGTTGGTATTTTGACATTAGAATTTGACGATGGCGAAGTGTTCCAGTGGAGCAAGGTTACTACATCAATATACAATCTCATTTTGGGGAAGCTGTATTGTGATCATTATGGTACAATGCGAATTCAGGGAAACGGATCATACTCATGTAAAATGAAATTCAAGGAACAATCTATAATTGATCGCAATCCTCGCCAGGTTCAAGGTGTTGTTCAGGACAGAAATGGGAAAACATTGGCTACATTAATTGGAAAGTGGGATGACAGCATGTATTATGTTAATGGTGACTATGGTGGAAAGGGAAAAAGTTATGAATCGTTGGCAGAAGCACATCTACTATGGAAGCGGAGCAAGCCTCCCAAGTTTCCTACTAGATATAACTTAACTCGTTTTGCCATCACACTAAACGAACTTACCCCAGGATTAAAGGAAAAGCTACCACCTACAGATTCCAGGTTAAGACCAGATCAAAGGTATTTGGAAAATGGGGAGTATGAGATGGCAAATTCAGAAAAACTACGGCTAGAGCAGCGACAACGACAGGCTGGGAAGATGCAAGCTAGTGGATGGGAACCACAATGGTTTGCTAAGGATAAATCAAGCGGTACATACCGCTACGTAGGAGGATACTGGGAAGCCCGACAACAAAGGAATTGGAACCCTTGTCCTAATATTTTTGGTCAAATTCCTTCTGATCATCTTCTAGGCTAA 2313 0.4406 MPPLPSSILARSELFSRPASHIVNHSISSGGSQRHEQQQLAVIPTAVDVRINDLVGNGISGILQKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIVINPETEKGFKIIGDESMRIISRNRISHYSQHCRKPFGEIHLQVSTIRESRSDEKRFSIFTGTKTLHLRAETREDRVAWVEALYAVKDMFPRMSNCELMAPVNNLAISTEKLRHRLMEEGVSEAAIQDSEQIMRNEYAALQSQLLLFKQKQLALIDNLRQLETEKVDLENTVVDESQRQRQGNDQDASSILGQEKFSEASACGSEDDNERNDAADEETDDDDDAAFFDTHDFLSSSGSFKSNESDFRASSFSSDDEGLSAVGFEEDADPSIRTVGTNYPRVKRRKKLPEPAEKEKGVSLWSLIKDNIGKDLTKVCLPVYFNEPLSSLQKCCEEMEYSYLLDRAYEWGRRGNTLMRILNVAAFAVSAYASTDGKICKPFNPLLGETYEADFPDRGFRFISEKVSHHPTIVACHCEGTGWKFWADSNLKSKFWGRSIQLDPVGILTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNGSYSCKMKFKEQSIIDRNPRQVQGVVQDRNGKTLATLIGKWDDSMYYVNGDYGGKGKSYESLAEAHLLWKRSKPPKFPTRYNLTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQAGKMQASGWEPQWFAKDKSSGTYRYVGGYWEARQQRNWNPCPNIFGQIPSDHLLG 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00274 770 Pfam Oxysterol-binding protein 394 748 IPR000648 GO:0008289
Vifa1g00274 770 CDD PH_ORP_plant 59 192 - -
Vifa1g00274 770 Gene3D - 57 186 IPR011993 -
Vifa1g00274 770 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 58 748 IPR000648 GO:0008289
Vifa1g00274 770 FunFam oxysterol-binding protein-related protein 1D isoform X1 480 652 - -
Vifa1g00274 770 ProSiteProfiles PH domain profile. 56 184 IPR001849 -
Vifa1g00274 770 MobiDBLite consensus disorder prediction 268 323 - -
Vifa1g00274 770 MobiDBLite consensus disorder prediction 305 322 - -
Vifa1g00274 770 MobiDBLite consensus disorder prediction 271 291 - -
Vifa1g00274 770 MobiDBLite consensus disorder prediction 347 370 - -
Vifa1g00274 770 Coils Coil 247 274 - -
Vifa1g00274 770 Gene3D - 691 754 - -
Vifa1g00274 770 FunFam Oxysterol-binding protein-related protein 2A 691 762 - -
Vifa1g00274 770 Pfam Pleckstrin homology domain 65 179 - -
Vifa1g00274 770 SUPERFAMILY Oxysterol-binding protein-like 389 765 IPR037239 -
Vifa1g00274 770 SMART PH_update 57 186 IPR001849 -
Vifa1g00274 770 SUPERFAMILY PH domain-like 59 184 - -
Vifa1g00274 770 Gene3D - 480 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00274 Vifa-Chr1 42531186 42536883 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00274 K20456 - gmx:100817212 1228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00274 1 42531186 42536883 Vifa1g00274 1 42531186 42536883 ECH