Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00228 ATGAAGTTTGGAAAAGAATTTGTGTCACAAATGGTACCTGAATGGCAAGAAGCATACATGAATTACAACTCTCTCAAAACCATTCTAAAAGACATTTCAAACTTCAAAAAACAAAGCAAATCAAAGTCACCAATCGCATCAACACCAAAAGGATCATTGAGAAGAAGGTTAACTCTCTATAGAGCTTTTAGTGGCCTTAATGTTAATCAAAGATTTTCTCCAAATAAGAGTGAAGATGAAGTTATACTTGTTCGTTCAGAAGAAGATGAAGATTCAAAAAGTTTGTATCAAACCATGTTTTTGAAGAGTTCTGAAGATGGAACAGAAAGAGATCTTGAGTTTTTCAAGAAACTTGATATTGAGTTTAATAAGGTTAATGTGTTTTATAACAAGATGGTTAAGGAAGTTGTTGGTGAAGCTGAGGAGTTGAGTAAGCAAATGAATGTTCTTATTGCTTTTAGAGTAAAGGTTGATAAGATTGGATTTGAAAATCTTCATAGCAATGAAACTTCTTCTTCTTCTTCAAGTTCCATTATGCATCATGTAAATGATGCTCAACATGGTGACTCACATGTACACATGGATGTGATTCAAGAAATTGAGATGAGCAATGAAAGTCAATTAAATGATGAAGATAGAAACTATGTGGCACAAACCATTCCTAAGAATTCCATTCAGGGTTTTAGACCAGCTCCTCTAGAGGTTCTTGATCATGTGAAGATCAATGTGAACACACCAGAAACTCCTGTGTCAACCATAAAAGGGCTTTTGTTAAGTTCAAAAACTGATCAAGCTTTTAACAAGAAAGAGCTTAAGAAAGCAGATTTGCTACTTAGCCAAGCCTTAAAGGAATTCTATCATAAGCTTAGGCTTCTAAAAAAATACAGCTTCTTAAACTTGTTGGCATTCTCAAAAATCATGAAGAAGTACGATAAGGTCAGTTTGAGGAATGCATCAAAAGATTACCTAAAGATGGTGGATAGTTCTTGTGTTGGCAGCTCAGATGAGGTTAATAGGCTTATGGATCGGGTGGAACGCGCTTTCATTAAGCACTTTGCGAATGGAAATCATAGAAAAGGAATGAACACGTTGAGACCGACCACGAAAAGGGAGCGGCATAGAACAACATTCTTATTAGGACTATTTACTGGCTGCGCAATTGCTCTCATTGTAGCACTAAGTATACTCATACAAGCAAGAAATATTCTATATAGTGAAGGCAGAATCAAATATATGGATAACATATTTCCACTTTATAGTCTCTTCGGATACATCGTCTTGCATATGATCATGTACTCCGCGAATGTATACTTATGGAGGCGTTTTAAAATCAACTATTCATTTATATTTGGATTCAAAGAAGGAAATGAGTTAGGTTATAGACAAGTATTTCTTCTTAGCTCCGGCCTTGCCATACTTTCTCTGGCTGCTGTTCTCTCAAACTTGGATATGGAAATGGATCAAAGAACAAAAACATTCTCAACATTTACCGAATTAGTGCCTTTAGGCCTTGTCATAGTTGTGCTTGCCATAACATTTTGTCCCTTCAATATCATATATAAATCGAGCCGCTTCTTCCTTATTCGATGCGCGTTTCATTCCATTTGTGCTCCTCTCTACAAGGTCACTTTTTCTGATAATTTCTTGGCAGATCAGCTTACCAGCCAGGTGCAAGCATATAGAAGTTTGGAATTCTACGTTTGCTACTATTTTTGGGGCGATTTCAAGACCAGATCAAACAAGTGTTCTGGTAGTGAAATCTATAAAACATTTTATTTAGTTGTAGCTATTATTCCATTTTGGATCCGTTTTCTTCAGTGTCTTCGCCGATTACTTGAAGAAGGAAATACAATGCATGGACTCAATGGACTAAAATACGTCTCGACAATAGTTGCAGTTGCAATGAGGACTATTTCTAGTGAGTTTGATCATGGGCCTGTTTGGAAAATTCTTGCTGCAAGTTCATCAGGCATTGCAACAATTGTTAATACTTATTGGGATATTGTCATGGATTGGGGCTTGCTTGAAAGAAAATCAAGAAATCCATGGTTGAGAGATAAACTTGCTCTACAATACAAAAGTGTATATTTTGTTGCTATGGTGTTGAATGTTATACTTAGGCTTGCATGGATGCAATCTGTTTTAGGCATTAAGGATGCTCCTTTCCTTCATAGAACAGCTTTGACTGCTATTGTAGCTTGTTTGGAGATTCTTCGCCGCGGCATTTCGAATTTTTTCAGGTTGGAGAATGAGCATTTGAACAATGTTGGAAAGTATAGAGCATTCAAGTCAGTGCCTCTTCCTTTCAACTATGAAGATGATGATGATGAAGACATTACTGATACATGA 2349 0.3631 MKFGKEFVSQMVPEWQEAYMNYNSLKTILKDISNFKKQSKSKSPIASTPKGSLRRRLTLYRAFSGLNVNQRFSPNKSEDEVILVRSEEDEDSKSLYQTMFLKSSEDGTERDLEFFKKLDIEFNKVNVFYNKMVKEVVGEAEELSKQMNVLIAFRVKVDKIGFENLHSNETSSSSSSSIMHHVNDAQHGDSHVHMDVIQEIEMSNESQLNDEDRNYVAQTIPKNSIQGFRPAPLEVLDHVKINVNTPETPVSTIKGLLLSSKTDQAFNKKELKKADLLLSQALKEFYHKLRLLKKYSFLNLLAFSKIMKKYDKVSLRNASKDYLKMVDSSCVGSSDEVNRLMDRVERAFIKHFANGNHRKGMNTLRPTTKRERHRTTFLLGLFTGCAIALIVALSILIQARNILYSEGRIKYMDNIFPLYSLFGYIVLHMIMYSANVYLWRRFKINYSFIFGFKEGNELGYRQVFLLSSGLAILSLAAVLSNLDMEMDQRTKTFSTFTELVPLGLVIVVLAITFCPFNIIYKSSRFFLIRCAFHSICAPLYKVTFSDNFLADQLTSQVQAYRSLEFYVCYYFWGDFKTRSNKCSGSEIYKTFYLVVAIIPFWIRFLQCLRRLLEEGNTMHGLNGLKYVSTIVAVAMRTISSEFDHGPVWKILAASSSGIATIVNTYWDIVMDWGLLERKSRNPWLRDKLALQYKSVYFVAMVLNVILRLAWMQSVLGIKDAPFLHRTALTAIVACLEILRRGISNFFRLENEHLNNVGKYRAFKSVPLPFNYEDDDDEDITDT 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00228 782 Pfam EXS family 416 753 IPR004342 GO:0016020
Vifa1g00228 782 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 774 - -
Vifa1g00228 782 ProSiteProfiles EXS domain profile. 583 779 IPR004342 GO:0016020
Vifa1g00228 782 ProSiteProfiles SPX domain profile. 1 324 IPR004331 -
Vifa1g00228 782 CDD SPX_PHO1_like 2 320 IPR034092 -
Vifa1g00228 782 Pfam SPX domain 1 326 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00228 Vifa-Chr1 37158599 37162493 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00228 - - gmx:100795104 1182.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00228 1 37158599 37162493 Vifa1g00228 1 37158599 37162493 ECH