Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00223 ATGGCATTAAACTTTCAAATGATTCTACCTATCTCATTGGTTCTTGCTATCATTTTATCAGGTGAAAGAACTTGTGAATCAGCAAGAGTGTTTACTATAGTAAACTATTGCAAAGAGACTCTTTGGCCAGCTGTAATACCTGGAGAAAATTTCAACGGAGGAGGATTCGTCCTTAAACAAGGACAATCCTCCATTTTCAACGCTCCAATCAGTTGGAGCGGTCGAATTTGGGCTCGAACAGGCTGCAACTTCGATCAAAACGGAGATGGACAATGCCAAACCGGTGCATGTGGCACAACATTAAAATGTGGAGGTGCAGGAAAAACCCCGGCGTCGCTAGCTGAATTCACACTCGCTAACCCTGACTTCTACGATGTTAGTCTCGTCGATGGCTTCAACGTGCCGATTTCTGTTAAGCCGATAAATGGAAAAGGAAACTGCTCGAGTGCTGGATGCGATTCTGATCTTAGAACAACTTGTCCCAAAGAACTTTCCGTTAAGTCTAACGGAAAGACCATTGGGTGCCGAAGTGCTTGTGATGTGTTTGATACAGATGAGTATTGTTGTAGAGGGAATTTCGGAAACCCTTCGACTTGTAGACCAACGTTTTATTCGAAGAAATTTAAGGAGGCTTGTCCAACTTCTTATAGTTATGCTTATGATGATCCAACAAGTATTTTCACATGCACTGGAACAGATTATGTCATTGCTTTCTGTGCAGACAGGAAAAAACCGATGTGCACTTATCATGATCATGACCTTAAGTGTAGTGGATCACAAGGCTTGAAGTTATTGATTGGAAGCTGGTGGATGGGAATATTCATAATAGTATTTTCAGTTCTTGGACTCTAG 852 0.4178 MALNFQMILPISLVLAIILSGERTCESARVFTIVNYCKETLWPAVIPGENFNGGGFVLKQGQSSIFNAPISWSGRIWARTGCNFDQNGDGQCQTGACGTTLKCGGAGKTPASLAEFTLANPDFYDVSLVDGFNVPISVKPINGKGNCSSAGCDSDLRTTCPKELSVKSNGKTIGCRSACDVFDTDEYCCRGNFGNPSTCRPTFYSKKFKEACPTSYSYAYDDPTSIFTCTGTDYVIAFCADRKKPMCTYHDHDLKCSGSQGLKLLIGSWWMGIFIIVFSVLGL 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00223 283 Gene3D Thaumatin 30 239 IPR037176 -
Vifa1g00223 283 Pfam Thaumatin family 35 239 IPR001938 -
Vifa1g00223 283 PIRSF PR5 1 277 IPR001938 -
Vifa1g00223 283 PANTHER OS03G0233200 PROTEIN 15 239 IPR001938 -
Vifa1g00223 283 SUPERFAMILY Osmotin, thaumatin-like protein 30 240 IPR037176 -
Vifa1g00223 283 SMART tha2 31 240 IPR001938 -
Vifa1g00223 283 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Vifa1g00223 283 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Vifa1g00223 283 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Vifa1g00223 283 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Vifa1g00223 283 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Vifa1g00223 283 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Vifa1g00223 283 FunFam Thaumatin-like protein 1a 29 240 - -
Vifa1g00223 283 ProSiteProfiles Thaumatin family profile. 28 239 IPR001938 -
Vifa1g00223 283 CDD TLP-PA 30 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00223 Vifa-Chr1 36610538 36611646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00223 1 267 Receptor kinase-like Gene Family AT5G38280 39.085 9.78e-54 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00223 - - gmx:100813659 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00223 1 36610538 36611646 Vifa1g00223 1 36610538 36611646 ECH