Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00206 ATGAAAGCTTCGGTCGAAGGATCCATGCTAGCTGAGAGGTTCGATGATGCTGAAAAGGATAAGAAGAAGAAGCGCCGATCCAATCGTCGAACCAAGCAGAATCTGCAATCAGCTTCTGAAGTAAATGAAGCTGTTGGGGTGTCCCCAGAATGCTCAGGAATAAATGGAACAGATTCTCTAACATCTGGATCTGTTGGCAATTCAATGAAACAACTGGGTGTTATTGTTTTGCCTCCTAATGAGCAAGAATTATCTGAAGCCCCGAGTGTTGGATCCATTTCAATGCCTCTTAACGATCGGGTGGTACCTCTTGATTTGCAAAACACGCAAATACATGAAGGAGGAATTGTTTCAAAGCCTTTTTCAGAGCCCATCTGTTGCTTAGGGTCACCGGGAACTAATAAAAAGAAAGACTCTGTCCCTTGCAGTCAAATTGGTGTTACTGGTGGTGTTAGTGGCCAGAGGAATTATTTTAGTCCACACTGGTCTGTTGAGGCTGTTGAGAAGGCATTGGATAGGGATGATGTTTTCAAAGCTGTCTTTCATGTCAATGCTCACAATAGATTTGAGGCCTACTGCAGAATTGATGGAGTGCCAACAGATATTCTCATTGGTGGGGTTCCGGCCCAGAATAGAGCTGTGGAAGGCGATGTTGTTGCTATCAAGATTGATCCTTTGTCATGGTGGACAAAAATGAAAGGACCAAATGTGGCGAACAGCAATACTGCAGTATTGGAAGATTGTAACCTTCTTGTCCAAGATAATGCAGTGAATGATAACAATTTTAAAGGAGAAGACAAGATAAATGCTGATCAAGACTCTTCTAATTGTAGAAGCTCTTCTGGTCAAAAAAACGTGGAATCTTGTCAGAACTCTTCCCCTTATAGAAGTAATCCATTTCCTGAAAAAAGATACATTTATGAGGATAGTAATACTACACAGGCTTCTCCTAACCATTTAAGTTTAATTGGACTAACTGGCCGAGATAGCAACAATAGACTTCCCTGTGATGAGTCTGCTTCCTCAAAGATTAATTCTGGTAGTGAACAGAGTGAAGTTATGAATGCAGTGGAGAATATGTGTTTGTTGGTTAATTCTTTCCCTTCTAAAAGACCAACTGGAAGAGTGGTTGCTGTTTTGGAGAGGTCTCCACGTCGAGAGTGTATTGTTGGTCATCTTAATGTCAAGCAATTGATTTTTTCCCGGGACATAAACAAGAAAGATGCAAGAAAGAATAAGAATTTGGTGTCTGAGCATGAATATATCCAGCTGACACCAATTGATCCAAAGTTTCCAAACATAATGCTTCTTGTTAGAGATTTACCAGAGAGCATTAATGGAAGGCTGAAAAGCGGTGATGCAGCAATTGAAATGGATCTGGTAGCTGTACAAATTGATGATTGGTTTGAAGAAAGTCCTTTTCCAGAGGGTCATATTTTGCAAATTTTTGGGAGAGGCAGTGAAATTCAGCCCCAGTTAGATGCTATTTTGTTTCAGAATGACATCCGTTATTCTGAGTTTCCGGCTATAGTTCTATCCTGTCTGCCACAAGTTCCTTGGGAGTTACCATTGAAGGAATTGCAAAGCCGAGCTGATCTTAGAAACTTGTGTATATTTACTATTGATCCTTCAACAGCAACTGATCTGGATGATGCACTGTCAATTGAGAAGTTGCGTAATGGAAATTATAGAGTAGGCATCCATATTGCTGATGCATCATATTTTGTTCTACCAGACACACATTTAAATGGTGATGCTCAGTTTAGGTCAACAAGTGTTTACATGTTGCAAAAGAAAATACCAATGTTACCTGCATTAGTCTCAGAAAATATTGGATCACTTAACCCTGGAGTGGATCGACTTGCATTTTCCATGTTCCTGGATGTAAATGTTAATGGGGATGTTGTAGACCGTTGGATTGGTCGTACTGTTATTCAATCTTGTTGTAAGCTTTCATATGAACATGCACAGGACATCATTGATAATGCTTTTGATTTTGAGAGTTCAAGCTTTCATGAAGATGACTATCCTAAAGTTCATGGCCATTTTGAGTGGCCTGATGTTATTACTTCTTTAAAGAGTCTCTATGAAATTTCAAAAGTTTTGAAATATAAGAGATTTAGTAGAGGGGCTCTTCACCTTGATAACCCCAAAATTGTTATCCTGTTTGATGAGAATGGCATCCCATATGACATTTCGTTTTCTGAACAGAAAGAATCAAATTTTCTTATTGAGGAATATATGCTCTTGGCCAATACAACAGCTGCCGAAGTAATATGTAGAGCTTATCCTGAAGTTGCACTACTGCGGAGGCATCCTGAACCGAATATGCGTAAGCTCAGAGAGTTTACAGCATTTTGTCAGAAGCATGGTTTAAATTTGGACACTTCTTCTTCTGGTCATATCCATCAGTCCTTAGAGCAATTAAAGGAAAAGCTCAAGGATGACCCTGTGCTTAATGATATACTTATTTCCTATGCTACAAAGCCAATGCAGTTGGCTTCTTACTTCTGTAGTAGTTATTTAAAGAATAATGAACAGGAATGGGGTCATTATGCACTTGCTGTCCCTTTATACACCCATTTTACATCACCTTTACGTCGATATTCAGATATTGTTGTCCATCGGACCCTACTTGCTACGATAGAGGCCGAGAACATTTATATGAAGCAGATTGGAAAGGAAGTTGGGGGAAAGAACAGATGTTTCACAGGCATCAACTTTGATAAAAATGCTGCAGAATCTGTCGAATGCAGGAAAGCTTTATCAGCTGCAGCTTTGAAGCACAGTGTTCTGAGTGCTGGAGCACTTGCGGATATTGCCGATCATTGTAATGAGAGAGAGAAGGCTTGTAGAAATGTTAAGGATGCCTGTGATAGACTTTACATATGGTTTCTCCTGAAGCAACAAAAGGTCTTATTATCAGAAGCAAGAATATTGGGACTTGGCCCGAAGTTCATGTCAATTTATATTCAAAAGCTAGCTGTTGAGAGACGTGTATATTATGATGAAGTTGAAGGTTTGACTGCAGAGTGGCTTGAGGCAACATCCACACTGGTGCTTAGCATATCTCCTAATAAGCGTGCTTTTAGAAGGGGCAACAATAATAAATGGAAGCCATTGTCAGAAGCTGTATTGCTTGCTTGTCCGAATGACCTGAAAGTTAAAGTGGATAATTGCAATAAAAATGAAGAAATGAAAGAGGATTCTATTGCATCTGACATGAACAAGCAGCACGTTTCCAGATCTGACACTGAAATTGAGCCTTTGTTTTTTCCACTCACTGTGCAACCTCTTTCAAAAATTCCAGTTGCACTTCATGCTGTTGGTGGTGATGCCGGGCCTCTTGATTTCGGTGTGAGGCTTTACATGAGCTCTTATTTTGGGTAA 3390 0.3985 MKASVEGSMLAERFDDAEKDKKKKRRSNRRTKQNLQSASEVNEAVGVSPECSGINGTDSLTSGSVGNSMKQLGVIVLPPNEQELSEAPSVGSISMPLNDRVVPLDLQNTQIHEGGIVSKPFSEPICCLGSPGTNKKKDSVPCSQIGVTGGVSGQRNYFSPHWSVEAVEKALDRDDVFKAVFHVNAHNRFEAYCRIDGVPTDILIGGVPAQNRAVEGDVVAIKIDPLSWWTKMKGPNVANSNTAVLEDCNLLVQDNAVNDNNFKGEDKINADQDSSNCRSSSGQKNVESCQNSSPYRSNPFPEKRYIYEDSNTTQASPNHLSLIGLTGRDSNNRLPCDESASSKINSGSEQSEVMNAVENMCLLVNSFPSKRPTGRVVAVLERSPRRECIVGHLNVKQLIFSRDINKKDARKNKNLVSEHEYIQLTPIDPKFPNIMLLVRDLPESINGRLKSGDAAIEMDLVAVQIDDWFEESPFPEGHILQIFGRGSEIQPQLDAILFQNDIRYSEFPAIVLSCLPQVPWELPLKELQSRADLRNLCIFTIDPSTATDLDDALSIEKLRNGNYRVGIHIADASYFVLPDTHLNGDAQFRSTSVYMLQKKIPMLPALVSENIGSLNPGVDRLAFSMFLDVNVNGDVVDRWIGRTVIQSCCKLSYEHAQDIIDNAFDFESSSFHEDDYPKVHGHFEWPDVITSLKSLYEISKVLKYKRFSRGALHLDNPKIVILFDENGIPYDISFSEQKESNFLIEEYMLLANTTAAEVICRAYPEVALLRRHPEPNMRKLREFTAFCQKHGLNLDTSSSGHIHQSLEQLKEKLKDDPVLNDILISYATKPMQLASYFCSSYLKNNEQEWGHYALAVPLYTHFTSPLRRYSDIVVHRTLLATIEAENIYMKQIGKEVGGKNRCFTGINFDKNAAESVECRKALSAAALKHSVLSAGALADIADHCNEREKACRNVKDACDRLYIWFLLKQQKVLLSEARILGLGPKFMSIYIQKLAVERRVYYDEVEGLTAEWLEATSTLVLSISPNKRAFRRGNNNKWKPLSEAVLLACPNDLKVKVDNCNKNEEMKEDSIASDMNKQHVSRSDTEIEPLFFPLTVQPLSKIPVALHAVGGDAGPLDFGVRLYMSSYFG 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00206 1129 Pfam RNB domain 530 882 IPR001900 GO:0003723|GO:0004540
Vifa1g00206 1129 Gene3D - 405 488 - -
Vifa1g00206 1129 MobiDBLite consensus disorder prediction 1 59 - -
Vifa1g00206 1129 MobiDBLite consensus disorder prediction 307 350 - -
Vifa1g00206 1129 Pfam Dis3-like cold-shock domain 2 (CSD2) 421 501 IPR041505 -
Vifa1g00206 1129 MobiDBLite consensus disorder prediction 262 350 - -
Vifa1g00206 1129 SUPERFAMILY Nucleic acid-binding proteins 373 504 IPR012340 -
Vifa1g00206 1129 SMART RNB_2 530 884 IPR001900 GO:0003723|GO:0004540
Vifa1g00206 1129 Hamap DIS3-like exonuclease 2 [DIS3L2]. 15 1104 IPR028591 GO:0000175|GO:0034427
Vifa1g00206 1129 SUPERFAMILY Nucleic acid-binding proteins 156 382 IPR012340 -
Vifa1g00206 1129 ProSitePatterns Ribonuclease II family signature. 851 875 IPR022966 -
Vifa1g00206 1129 Gene3D - 151 249 - -
Vifa1g00206 1129 FunFam DIS3-like exonuclease 2 148 249 - -
Vifa1g00206 1129 SUPERFAMILY Nucleic acid-binding proteins 492 969 IPR012340 -
Vifa1g00206 1129 MobiDBLite consensus disorder prediction 273 298 - -
Vifa1g00206 1129 Coils Coil 14 34 - -
Vifa1g00206 1129 PANTHER RIBONUCLEASE 34 1126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00206 Vifa-Chr1 33464094 33469618 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00206 K18758 - gmx:100817387 1519.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00206 1 33464094 33469618 Vifa1g00206 1 33464094 33469618 ECH