Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00177 ATGGCTATGGCTTCACCAGACTCTTCAAACGCTACCGGTGGTAGCTCCTTCGCTGCAACAACTACCTTCAAGCAGAAGATCTCTGTCAAACTCGACGACACCAACTATCGTCAATGGAAGCAACAGGTCGAAGGCGTTCTTCGTGGCACCAAAATGGTTCGCTTCGTCGTTTCTCCTCAAGTACCGGAACGCTACCTCACTGTTGCTGATCGCGACGTCGGAACTGAGAATCCGAACTATGTCGCGTGGGAGGAGCAAGACGCTCTTCTCTTTGTCGCTGCTGTCAATACGAAGTCTGATTTCATCTCGATTGATGAGCTTGAGTCGCTTCTTCTTGATCAAGAAGCGCGAATTGATAGAGCCAAGAAGAACGTCGTGGAAACTGTTTCAGTGAATCTCACGCAAGGGAATGAAGAGAAGTCCAGTTTCAGTCCTCAATCTGCTGAGATTCCTGATTCCAATGGTGGTGTTTCTTCTGGCTATGGAAGAGGTAGCAATTTTCGTGGCCGAAACAATAGAGGTGGAAGGTTCAGAGGTCGCGGTGGTCGCAGTGGCTTTAGAAACTCTGTTCAGTGCCAAATATGCTCTAAAGTAGGTCATGATGCTAGCTACTGCTATTTTCGTCACTCTCAGGATGCTTATGGCTCATATCCTCCTTATGGCAACTATGGCAATTATGTCTTTGCTCAGCCCAATGTGTGGACTCAGCCTGGTTTTCGAGCCTCAGCACCTCACACCATGAACTCTGCTAGACCTGCTGCTGCGTCCATGCCTGCTCAATATCCTACTCCTAGGCCTCAAGCATTGATTGCTGGAACTGATTGTTCCTCCTTCTACAATCAGGCCTGTCCTACACCTTGTTCTGCAAACTCTCAAGGTTATTTTACTCCTTTACCTGTGCCTCTCACTGCTGTACCTCCATCACAATCTCAGAGTCATGCTGGCCTCATTACTCCTGTCATATCTCATAATAGTTCTGTATCAGACTCCAACACTGCCTCTTCTGAAGCTCATGAGTTAGCTTCTCTAGCCTCTGCCTCAACCATTGCTCCAGTCTCAGACACCACTGCATCAGTCACAGAATTGCCTGCAACTGCAGCTGTTAGCCATGAACAGGCTCTCTCTTCACCTGCTGTTCCTGCCTCCGGTTTCTCTACTCCTGCCGCTTCTGATTCCTCCACTGCAGTAGCTCCTGGTGACCCTTCAACTTCTGCTGAATCAGATTCACCATATGAAACAAGTTTATTACCCGTTTGTGTTTATGCGTCTACGAGATTGAGTAGTTCTGAAGAAATGGGTTATGGTTGTGAGTTTTTCGATGATAATCGTGGAGTTGAGTCGGTTGAGGGTAATGGAGAAGATTATGATGATGAATTTTTTGAGGCACTTTCGGATACTCTTTCGAATGAAAGTGATGAAATTGAGACTAGTTGTAAGAATCTAGAAGGTGAAAAAGATAGAGAATTTAGTTTGAGGAATGTTGTTGATGATGATCATGGTGAGGATTTTGACCTAGAAGAAGAGGACAAATCGAAGTTGGTTTTCAAATTTCAATATCAAAATTGGGGGTGTGACTTTAGTGAGGAATTGAAGGGAGGTTTTAGTGAAAGTAGTGATTTTGATAAAAGGGGTGAGGTTTCTTCGAGTACAAACAAATATGAGTTTGTTTTAGGAAAGAGTTTTAGCCGAGTTTTGGATGAACCTAAGGCTGTGAATTTTACTGTCAAAGAGTTTTTTATTCGTTCAAATGATGAGTTTCCGTTGGAAAAAAATCGTGTTGCCGATGATTCAGCTGGTTTCTTATCCGAGAAGAAATTGAATGAAGAAAACTGTGAAGAGGTTGTTGATGAGAAAATTCTTGATAGTTTCTCCGAAAGATTGCACGTAGAGGAAGTGTCAGAGAAGCTTGAGTCAGCTGGTTTATCATCCGAGAGGAAATTGAATGAAGAAAATTGTGAAGAGGTTGTTAATGGGAAAGTTCTTGGTAATTTCTCCGAAAGATTGCACGTAGAGGAAGTGTCAGAGAAGCTCGATCCAGCTGGTTTATCATCCGAGAGGAAATTGAACGAGGAAAGTTGTGAAGAGGTTGTTAAAGGGAAAATTCATGATAGTTTCTCCGAAAAATTGCATGTAGAGAAAGTGTTGGAGAAGCTCACGCCAGCTAGTTTATCATCTGATAGGAAACTGAATGAAGAAAACTGTGAAGAAGTTGTGAATGAGAAAATTATTGACAGTTTCTCCGAAAAATTGCACGTAGAGAAAGTGTCAGAGAAGCTCGAGCCAGCTGGTTTCTTATCTGAGAGGAAATTGAATGAAGAAAATTATCAAGAGGTTGTTGACGAGAAAATTGTTGATAGTTTTTTCGAAAAATTGCACGTAGAGGAAGTGTCGGAGAAGCTCAAGAATTTGGAACCATATGAGCGGAATTTTCTATTAGATGACGATTTTGTTTGTTCAAGTTCTGACACAGATTCTATGAGTTCTTTGGAATCTGGTTTTTTGTCCGACACGGATTTTGGAACAACTACCGAGCATGATACAGATTTTGGAACAACTACCGAGCATGATACATTAGGAAACAATGAAGAAAGTATAGAAGATTTGGATTTCAAGGATGACAAAAGCCTCGAAAGTTTGGATTTCGGTTACGAGCCTGATGATTTTGCTGAAGAAGACGAAGATATAATGAACGAGCTCGGAAAGTTGGAAGAAGAAGTCAAACAAGAACAATCGGCGAAACAAAATTCGAAGAGCGTAACAGCTTTTGATCTTGAGGAGTCGAACCGGTTTGACACGCTTTGGGAGCATCAAGATCTGATAGAACAGCTGAAGATGGAATTGAAGAAAGTTAAAGCTACTGGTTTACCTACAATCTTTGAGGATTCCGAGTCGCCGAGGATTATGGAAGATTTGAAGCCATGGAAAATTGATGAAAAGTTTCAGCATGGTAGTAGTACTACAAATGAGCTTCCGAAATTCTACAGAAGTTATAGAGAAAGAATGCGAAAATTCGATATCTTGAATTACCAGAAAATGTATGCTTTAGGTCTTATGAAGTTAAAGGACCCACTACAATCATTTTCAATTCACAAGAAATCTTCAACAATCACAAGCTTATTTAGACGTAACAAAGAAATTGATGCTGACCCAATGAAGAAGTTCATAAGAGAATTATACAGTGATTTGGAAATGGTTTATGTGGGACATTTATGTCTTTCTTGGGAATTCCTTCATTGGGAATATGAAAAGGCTTTGAAGATATGGGAAAATGATCAATATGGATTTAGAAGGTTCAATGAAGTAGCTGGAGAGTTTCAACAATTTCAAGTTCTTCTTCAAAGATTTATAGAGAATGAACCTTTTCAATGTCCAAGAGTTGAAAATTATGCTAGGAATCGTTGTTCCATGAAGAATCTTCTTCAAGTTCCTGTTATACGAGAAGACAAAGGGAAGGATAAAAAAATGTTTAGAAAAAGAGAAGTTGACAATGATGCCATCACAAGTGACATGCTAGTAGAAATTTTAGAAGAATCAATAAGAACAATTTGGCGTTTTATTAGAGGTGATAAAGATGCATCAAACTTGACAATTAAAAGTCTTAAAGAACATCATGTGGAGCTTCAAGACCCTGCTGATTCACAGCTTCTACTGGAGATTCTAACCGATCTTCAAAAGAAAGAAAAGAGACTAAGAGAGCTTTTAAGGAGTGGAAGTTGCATATTGAAGAAGTTCAAAAAGCATGATGAAGATGAAACAGATCCGGTTCTTTATTTTTTCTCTCAAGTAGATATGAAATTGGTTTGGAGAGTGTTGAACATGTCAAGGATAACCACGGATCAGCTAGGATGGTGTCGTAGTAAATTAAACAATATCAATTTTGTAAACAAAAGGATACACGTAGAATCATCATTCTTACTTTTTCCTAGCTAA 3930 0.402 MAMASPDSSNATGGSSFAATTTFKQKISVKLDDTNYRQWKQQVEGVLRGTKMVRFVVSPQVPERYLTVADRDVGTENPNYVAWEEQDALLFVAAVNTKSDFISIDELESLLLDQEARIDRAKKNVVETVSVNLTQGNEEKSSFSPQSAEIPDSNGGVSSGYGRGSNFRGRNNRGGRFRGRGGRSGFRNSVQCQICSKVGHDASYCYFRHSQDAYGSYPPYGNYGNYVFAQPNVWTQPGFRASAPHTMNSARPAAASMPAQYPTPRPQALIAGTDCSSFYNQACPTPCSANSQGYFTPLPVPLTAVPPSQSQSHAGLITPVISHNSSVSDSNTASSEAHELASLASASTIAPVSDTTASVTELPATAAVSHEQALSSPAVPASGFSTPAASDSSTAVAPGDPSTSAESDSPYETSLLPVCVYASTRLSSSEEMGYGCEFFDDNRGVESVEGNGEDYDDEFFEALSDTLSNESDEIETSCKNLEGEKDREFSLRNVVDDDHGEDFDLEEEDKSKLVFKFQYQNWGCDFSEELKGGFSESSDFDKRGEVSSSTNKYEFVLGKSFSRVLDEPKAVNFTVKEFFIRSNDEFPLEKNRVADDSAGFLSEKKLNEENCEEVVDEKILDSFSERLHVEEVSEKLESAGLSSERKLNEENCEEVVNGKVLGNFSERLHVEEVSEKLDPAGLSSERKLNEESCEEVVKGKIHDSFSEKLHVEKVLEKLTPASLSSDRKLNEENCEEVVNEKIIDSFSEKLHVEKVSEKLEPAGFLSERKLNEENYQEVVDEKIVDSFFEKLHVEEVSEKLKNLEPYERNFLLDDDFVCSSSDTDSMSSLESGFLSDTDFGTTTEHDTDFGTTTEHDTLGNNEESIEDLDFKDDKSLESLDFGYEPDDFAEEDEDIMNELGKLEEEVKQEQSAKQNSKSVTAFDLEESNRFDTLWEHQDLIEQLKMELKKVKATGLPTIFEDSESPRIMEDLKPWKIDEKFQHGSSTTNELPKFYRSYRERMRKFDILNYQKMYALGLMKLKDPLQSFSIHKKSSTITSLFRRNKEIDADPMKKFIRELYSDLEMVYVGHLCLSWEFLHWEYEKALKIWENDQYGFRRFNEVAGEFQQFQVLLQRFIENEPFQCPRVENYARNRCSMKNLLQVPVIREDKGKDKKMFRKREVDNDAITSDMLVEILEESIRTIWRFIRGDKDASNLTIKSLKEHHVELQDPADSQLLLEILTDLQKKEKRLRELLRSGSCILKKFKKHDEDETDPVLYFFSQVDMKLVWRVLNMSRITTDQLGWCRSKLNNINFVNKRIHVESSFLLFPS 1309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00177 1309 MobiDBLite consensus disorder prediction 136 166 - -
Vifa1g00177 1309 Pfam Protein of unknown function (DUF1666) 1060 1308 IPR012870 -
Vifa1g00177 1309 PANTHER OS09G0413600 PROTEIN 726 1309 - -
Vifa1g00177 1309 MobiDBLite consensus disorder prediction 136 184 - -
Vifa1g00177 1309 Coils Coil 464 484 - -
Vifa1g00177 1309 Coils Coil 104 124 - -
Vifa1g00177 1309 Coils Coil 892 919 - -
Vifa1g00177 1309 MobiDBLite consensus disorder prediction 377 410 - -
Vifa1g00177 1309 MobiDBLite consensus disorder prediction 844 865 - -
Vifa1g00177 1309 Coils Coil 1216 1236 - -
Vifa1g00177 1309 Coils Coil 933 953 - -
Vifa1g00177 1309 MobiDBLite consensus disorder prediction 844 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00177 Vifa-Chr1 28123220 28148845 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00177 - - psat:127128543 1448.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00177 1 28123220 28148845 Vifa1g00177 1 28123220 28148845 ECH
Vifa1g00177 1 28123220 28148845 Vifa1g00177 1 28123220 28148845 PCT