Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00173 ATGTATTCTGGTGGTTATACTGCTGAAGTTACAAACTTATCTCCAAGAGCTACTGAGAATGACGTACACAATTTTTTTGGATACTGCGGTGTGATTGAGCGTGTTGATGTGATAAGACACAGTGATTTTGACTCTACTGCATATGTGACTTTTAAGGAAGCTTATGCCCTGGGAACTGCATTATTGCTTAATGGTTCGATGATTTTGGACCAAAGCATTTCCATATCGCTCTGGGATGCTTATACAGATGACAGTAACGTTGACGAAAGTATTACATGCTCTCAAGATATTCACATGGATAAGTTTGTTTCTTCCCCTGGAGAAGCTTTTACTATGGCCCAAGAGGTTGTCAAAACAATGGTAGCAAAAGGATATGTACTGAGCAAAGACGCATTCGTGATGGCAAAAGCTTTTGACGAATCGTGCAGTGTATCATCCACAGCGTCAGCCAAAGTCGTTGAACTCAGCAACAAAATTGGATTGACAGAAACCATAAATTCAGGTATTGAAACTTTCAAATCTGTTGACGAGAAGTATCATGTTACAGATATCACAAAATCGGCCGCAGCAGTTACGGGAACGACAGCTATAGTCGTGGCAACAGTTACTGGGAGAGCAGCTGTGGCTGCGAGTAATGCTATAGTCAATAGCAGCTACTTTGCAAAAGGGGCTCTTTGGGTTTCGGATATGTTATCTCGTGCGGCGAAATCAGCCGCGGAGTTGGGTCAGCATCAAAACAAATGA 744 0.422 MYSGGYTAEVTNLSPRATENDVHNFFGYCGVIERVDVIRHSDFDSTAYVTFKEAYALGTALLLNGSMILDQSISISLWDAYTDDSNVDESITCSQDIHMDKFVSSPGEAFTMAQEVVKTMVAKGYVLSKDAFVMAKAFDESCSVSSTASAKVVELSNKIGLTETINSGIETFKSVDEKYHVTDITKSAAAVTGTTAIVVATVTGRAAVAASNAIVNSSYFAKGALWVSDMLSRAAKSAAELGQHQNK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00173 247 Gene3D - 4 86 IPR012677 -
Vifa1g00173 247 SMART rrm1_1 7 76 IPR000504 GO:0003723
Vifa1g00173 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Vifa1g00173 247 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 6 244 - -
Vifa1g00173 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 73 IPR000504 GO:0003723
Vifa1g00173 247 SUPERFAMILY RNA-binding domain, RBD 6 79 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00173 Vifa-Chr1 27035053 27036611 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00173 - - psat:127128539 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00173 1 27035053 27036611 Vifa1g00173 1 27035053 27036611 ECH