Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00160 ATGGCAAGAGCAACCTCACAGTGCGGTCTTTCACTCATACACCTAACTTTACTCCTCTCATCAACCCTCCTCTCTGCAACTCTCGAAGAACAAAACGACAACCCAATCACCCGTTTCCAACGCTACCTCCAAATCAACACCGCACACCCAACCCCAGACTACTCCTCCGCCGTCTCCTACCTCATCTCCCAAGCTAACTCCATCGGCGGTATCCTCCACAAAACCTTAGAATTCTCCCCCGGCAAGCCTCTCCTCCTTCTAACATGGCCCGGCTCCCACTCCTCCCTCCCCTCCATCCTCCTCAACTCTCATCTCGACTCCGTCCCCGCCGAATCATCCAAATGGACCCACCCTCCCTTCTCCGCCACCCGCACCTCCGACGGCAACATCTTCGCCCGCGGCGCACAGGATGATAAATGCATAGCCATGCAGTACCTCGAAGCAATCCGCAATCTCCGCAATAACAACTTCGTTCCTGTTCGTTCCGTTCATATCTCCCTTGTCCCCGATGAGGAGGTTGGTGGCTTTGCTGGCGCTGCCAAGTTTGTTGAGTCCGAGGAATTTCAAGCGCTTAACGTTGGGTTTGCGCTCGACGAAGGACAGGCTTCGGTTGGGGATCAGTTTAGGGTTTTTTATGCTGATAGGATTCCGTGGAATTTGAAGATTAAGGCTAAGGGACAACCGGGACATGGTTCCAAGTTGTATGATAATAGTGCTATGGAGAATTTGATGAAGAGTGTTGAAGTTGTGAGTAGGTTTAGAGAGAGTCAGTTTGATGTTGTTAAGGCTGGGAAGGCTATGAATTCTGAAGTTGTTTCTGTTAATCCGGTTTATCTCAAAGCAGGAGTTCCCACTCAAGATGGATTTGCAATGAATGTGCAACCTTCGGAGGCAGAAGCTGGTTTTGATCTTAGGTTGACACCTACGACTGACCCTGAGGAAATGAAGAGGCGAATTGCTGCTGAATGGGCACCTTCTGTTAGAAATGTGTCATTTGAGATCATAGAAAAAGGACCCATCAGAGACTATTTGGGACGTCCTTTATTAACTGCAACTAATGATTCGAATCCATGGTGGTTAGTTTTCAAGCAGGCTATAACCTCAGTTGGAGAAAAACTTTCAAAGCCTGAAATTCTTCCATCCACAACAGATGCTCGATATCTTCGGCAGAAAGGGATTCCTGTACTTGGTTTTTCCCCAATGAAAAATACTCCCATTTTGCTTCATGACCACAATGAGCATCTACGAGATACTGTGTACATGAAGGGAATACAGGTATACGAGTCTTTGATAAGCTCCTTGAGTTCGTTTACAGAAGCTTCACATTAG 1329 0.4771 MARATSQCGLSLIHLTLLLSSTLLSATLEEQNDNPITRFQRYLQINTAHPTPDYSSAVSYLISQANSIGGILHKTLEFSPGKPLLLLTWPGSHSSLPSILLNSHLDSVPAESSKWTHPPFSATRTSDGNIFARGAQDDKCIAMQYLEAIRNLRNNNFVPVRSVHISLVPDEEVGGFAGAAKFVESEEFQALNVGFALDEGQASVGDQFRVFYADRIPWNLKIKAKGQPGHGSKLYDNSAMENLMKSVEVVSRFRESQFDVVKAGKAMNSEVVSVNPVYLKAGVPTQDGFAMNVQPSEAEAGFDLRLTPTTDPEEMKRRIAAEWAPSVRNVSFEIIEKGPIRDYLGRPLLTATNDSNPWWLVFKQAITSVGEKLSKPEILPSTTDARYLRQKGIPVLGFSPMKNTPILLHDHNEHLRDTVYMKGIQVYESLISSLSSFTEASH 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00160 442 CDD M20_AcylaseI_like 32 435 - -
Vifa1g00160 442 PANTHER AMINOACYLASE-1 25 439 - -
Vifa1g00160 442 FunFam Aminoacylase 1 27 219 - -
Vifa1g00160 442 Pfam Peptidase family M20/M25/M40 100 432 IPR002933 GO:0016787
Vifa1g00160 442 FunFam aminoacylase-1 isoform X1 219 330 - -
Vifa1g00160 442 Gene3D - 220 330 - -
Vifa1g00160 442 PIRSF ACY-1 25 439 - -
Vifa1g00160 442 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 135 174 IPR001261 -
Vifa1g00160 442 NCBIfam N-acyl-aliphatic-L-amino acid amidohydrolase 26 437 IPR010159 GO:0004046|GO:0005737|GO:0006520
Vifa1g00160 442 Gene3D - 356 437 - -
Vifa1g00160 442 Gene3D Zn peptidases 25 219 - -
Vifa1g00160 442 Pfam Peptidase dimerisation domain 219 321 IPR011650 -
Vifa1g00160 442 SUPERFAMILY Zn-dependent exopeptidases 26 435 - -
Vifa1g00160 442 FunFam Aminoacylase-1, putative 356 437 - -
Vifa1g00160 442 SUPERFAMILY Bacterial exopeptidase dimerisation domain 219 324 IPR036264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00160 Vifa-Chr1 24715429 24726171 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00160 K14677 - gmx:100817383 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00160 1 24715429 24726171 Vifa1g00160 1 24715429 24726171 ECH