Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01546 ATGGAAACTAATGAGTGTTTGCAGAACAATGGTGGTTGTTGGCAGGACGCTGCTGCTAACATTACTGCGTGCAGGGACACTTTCAGAGGAAGAGTATGCGAATGCCCAGTTATACAAAATGTGCAGTTTGTTGGTGATGGATATACCCATTGTGAAGCTACAGGGGCCTTGAGGTGTGCAATCAACAACGGAGGTTGTTGGAAAGAAACCAGAGGTAGCACGACTTTCTCTGCTTGTATTGATGACCACACCAAAGGTTGCAAGTGTCCACCTGGATTCCAGGGAGATGGAGTCAACTCCTGTAAAGATCTGGATGAATGCAAGGAAAAATTGGCCTGCCAATGCCCAGAATGTCAATGCAAAAATACTTGGGGAAGTTATGAATGCTCATGTACTGATGGTTTGTTCTACACGCGAGAAAATGATATGTGCATTGGAAAATATGCTGCTTCGGTGACCGGTGGGGGCATCGTTTGGATGGTTATTCTGATATTGGCTGTTGCTGGTGCCGGGGGGTATGCATTTTACAAGTACAGAATCCGGAGATACATGGACTCTGAGATAAGGGCAATTATGGCCCAATATATGCCCTTGGATAATCAACCGGAGACTTCTATTCATGCTCAAGGAGATGTCTAG 639 0.4554 METNECLQNNGGCWQDAAANITACRDTFRGRVCECPVIQNVQFVGDGYTHCEATGALRCAINNGGCWKETRGSTTFSACIDDHTKGCKCPPGFQGDGVNSCKDLDECKEKLACQCPECQCKNTWGSYECSCTDGLFYTRENDMCIGKYAASVTGGGIVWMVILILAVAGAGGYAFYKYRIRRYMDSEIRAIMAQYMPLDNQPETSIHAQGDV 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01546 212 ProSitePatterns Calcium-binding EGF-like domain signature. 103 129 IPR018097 GO:0005509
Vian9g01546 212 CDD EGF_CA 103 134 - -
Vian9g01546 212 Gene3D Laminin 57 145 - -
Vian9g01546 212 FunFam vacuolar-sorting receptor 1 1 52 - -
Vian9g01546 212 Gene3D Laminin 1 46 - -
Vian9g01546 212 PANTHER EGF-LIKE DOMAIN-CONTAINING PROTEIN 3 145 - -
Vian9g01546 212 SMART egfca_6 103 145 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01546 Vian-Chr9 31750528 31753027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01546 1 212 Miscellaneous Gene Families AT3G52850 66.822 8.44e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01546 - - gmx:100815266 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00806 2 11953957 11959128 Vian9g01546 9 31750528 31753027 PCT