Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01537 ATGGGGAAAATCCCTCCGTCGTTTCGCTCTGCAATCGGAAACCCTAACATTCGAAACCCTTCTTCTCTGTTCCGCCCTCAACCACCTTCTCCTCCCTCCAAACCATTCCCTCCCACCAAGAAAAAATCCCCAAAACCCATCCCACAACAACCAAACCCTCTCTTCAAATCCCCAAATCTCGAAGATGCCAAGAAAATCTTCGACTCCATCGCCAATTCCTCCAAAGACCCTCGCTTTCCCAATTCCCTCCTCCACTCCTACGCCAAAATCGCCACCTCTACCTCCGACTCCGTCAAATTCCTCCACCACATCACCAAAACCCTCCCTTCCTTCTCCCCCGATCATTCCACCTTCCACATTCTCCTTTCCCACTCCTGCACCAACCCCGATTCCAATTCCAATCCCAATTCCAATTCCGCTCTCTCCGCAATCCACCAAACTCTAAATTCAATGCGCGCCGCCGGCGTCACTCCGGATGCCGCCACAGCTGATGTTTCGGTTCGCGCCTTGTGCTCCGCCGGCCACCTTGACCATGCCGTTGACTTGATCAAAGAATTCGCCTCCAAGCACTGCCCTCCGGACACCTACACCTTCAATTTCCTAGTCAAGCACCTCTGCAAAGCCCGCGCCTTGTCCACTGTTTACGCCTTCATCGACGAAATGCGCGAAAAATTCGGTGTGAAGCCTGATCTTGTTACCTACACTATCCTGATTGACAATGTGTGTAATGGTAAGAACTTGAGAGAGGCAATGAGGCTGGTGAGTGTGCTTCATGAGGAAGGGTTTAAGCCTGATTGCTTTGTGTATAACACCATTATGAAAGGGTATTGTGTGTTGAGCAGAGGGAGTGAGGCGATTGAGGTTTATAACAAGATGAAGGAGGAAGGGGTGGAGCCTGATCTTGTTACTTACAACACTTTGATTTTTGGGTTGTCCAAGTCGGGGAGGGTGGTGGAGGCGAAGAAGCTGCTGCGTGTGATGACGGAGAAGGGTTATCTTCCTGATGAGGTGACTTATACTACATTGATGAATGGGATGTGTAGGAAGGGGGAGGCTCTGGCAGCGCTGGCATTGCTTGGGGAGATGGAGGGGAAGGGGTGCAGCCCCAATGAATGCACATATAACACACTGCTGCACGGGTTGTGCAAGGCGAGGTTGTTGGAGAAGGCGACTGAGTTCTATGGGGTGATCAAGGAAGGTGGTTTGAAGCTTGATACTGCTTCCTATGGGACATTTGTGAGGGCACTCTGTAGGGATGGCAGAGTTGCCGAGGCTTATGAGGTGTTTGATTATGCTGTTGCGAGCAAGAGCTTGACTGATGTTGCTGCTTACTTGACGTTGGAGAGCACGCTTAAGTGGCTCAAGAAGGCCAAAGAACAAGGGCTTGCTGTTTAA 1395 0.509 MGKIPPSFRSAIGNPNIRNPSSLFRPQPPSPPSKPFPPTKKKSPKPIPQQPNPLFKSPNLEDAKKIFDSIANSSKDPRFPNSLLHSYAKIATSTSDSVKFLHHITKTLPSFSPDHSTFHILLSHSCTNPDSNSNPNSNSALSAIHQTLNSMRAAGVTPDAATADVSVRALCSAGHLDHAVDLIKEFASKHCPPDTYTFNFLVKHLCKARALSTVYAFIDEMREKFGVKPDLVTYTILIDNVCNGKNLREAMRLVSVLHEEGFKPDCFVYNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVVEAKKLLRVMTEKGYLPDEVTYTTLMNGMCRKGEALAALALLGEMEGKGCSPNECTYNTLLHGLCKARLLEKATEFYGVIKEGGLKLDTASYGTFVRALCRDGRVAEAYEVFDYAVASKSLTDVAAYLTLESTLKWLKKAKEQGLAV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01537 464 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 225 447 - -
Vian9g01537 464 Pfam PPR repeat family 264 311 IPR002885 -
Vian9g01537 464 Pfam PPR repeat family 194 243 IPR002885 -
Vian9g01537 464 Pfam PPR repeat family 334 383 IPR002885 -
Vian9g01537 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Vian9g01537 464 MobiDBLite consensus disorder prediction 22 53 - -
Vian9g01537 464 Pfam PPR repeat 168 189 IPR002885 -
Vian9g01537 464 Gene3D Tetratricopeptide repeat domain 294 361 IPR011990 GO:0005515
Vian9g01537 464 Gene3D Tetratricopeptide repeat domain 362 434 IPR011990 GO:0005515
Vian9g01537 464 Gene3D Tetratricopeptide repeat domain 214 293 IPR011990 GO:0005515
Vian9g01537 464 Gene3D Tetratricopeptide repeat domain 81 213 IPR011990 GO:0005515
Vian9g01537 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Vian9g01537 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Vian9g01537 464 Pfam PPR repeat 401 431 IPR002885 -
Vian9g01537 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Vian9g01537 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Vian9g01537 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Vian9g01537 464 MobiDBLite consensus disorder prediction 1 60 - -
Vian9g01537 464 NCBIfam pentatricopeptide repeat 232 266 IPR002885 -
Vian9g01537 464 NCBIfam pentatricopeptide repeat 337 371 IPR002885 -
Vian9g01537 464 NCBIfam pentatricopeptide repeat 302 336 IPR002885 -
Vian9g01537 464 NCBIfam pentatricopeptide repeat 408 431 IPR002885 -
Vian9g01537 464 NCBIfam pentatricopeptide repeat 372 405 IPR002885 -
Vian9g01537 464 NCBIfam pentatricopeptide repeat 268 300 IPR002885 -
Vian9g01537 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01537 247 461 Glycosyltransferase AT1G05670 31.963 2.38e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01537 - - gmx:100782321 721.465