Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01534 ATGTTCCTTTCACTCACATATTCGTTCACTTTCTTCTTCACTCTCATCCTCACATCATCATCACCTTCACACATTGCAACATTCACACCACCAGCCACCAAAATATCCATCACAAGCCACAACATTCAAAGCCTCAACAAAGCTGACAAAGGGACTAAAATCGCAGGTATATCGCAGTTTAAACGATATCTACATCGTTTTGGGTACCTACAAAACAACAACAACAGTTTTAACGATGAATTTGATGTCGTGTTGGAATCTGCTCTCGTCAGATACCAAGGAAACCTTGGTCTCCAAGTAACCGGGAAGCTCGACTCCGACACGGTTGCTCAAATGATCACACCAAGATGTGGTGATCCAGACACAAACACAAGACATCAGAATCACGATCAGAATCACGTCCACAAAGTGCATTCTTCAAAGAACTTCGTGTTTTTCCCGGGAAAACCACGTTGGTCACGTTCAATGCCGATGACACTCACCTACGCCTTCTCACGTGAGAACATGATCCACAGTTTGAGCATGAAAGACATAAGAGAGGCATTCCGAAAAGCATTCTTGAGATGGGCTTCGGTGATTCCTGTTAGCTTTGTTGAGGTGAGTGACTCTGAAGTTTCGGATTTGAAAATAGGGTTTTACAAAGGGGAGCATGGTGATGGTGAGCCCTTTGATGGGGTGCTTGGGGTGTTGGCCCACTCCTTCTCGCCGGAGATCGGGCGCCTCCACCTTGACGCGGCAGAGACATGGGCGGTGGACTTTGAGGCCACCGTGTCGGAGGTGGCGGTGGACTTGGAGTCGGTGGCCACACATGAGATTGGACACTTGTTAGGATTGTCTCATAGTTCCGTGAAAGATGCTGTGATGTATCCGAGTTTGAGGCCACAAGATAAGAGGGCTAATCTGAACATTGATGACATAAAGGGAGTGCAATCTCTGTATGGATCAAACCCTAATTTCAGATCAGAGTGGTCGCTAGAATCTGATATGTCGGCAAATAAAGGTTCCAACTTTCTCAAACCTTTCAGGTTGGCTTCTAGTTTGATCATAATAATTTCTCTCATGCATAGTTTATGTACATTATAG 1083 0.4543 MFLSLTYSFTFFFTLILTSSSPSHIATFTPPATKISITSHNIQSLNKADKGTKIAGISQFKRYLHRFGYLQNNNNSFNDEFDVVLESALVRYQGNLGLQVTGKLDSDTVAQMITPRCGDPDTNTRHQNHDQNHVHKVHSSKNFVFFPGKPRWSRSMPMTLTYAFSRENMIHSLSMKDIREAFRKAFLRWASVIPVSFVEVSDSEVSDLKIGFYKGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFEATVSEVAVDLESVATHEIGHLLGLSHSSVKDAVMYPSLRPQDKRANLNIDDIKGVQSLYGSNPNFRSEWSLESDMSANKGSNFLKPFRLASSLIIIISLMHSLCTL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01534 360 FunFam Metalloendoproteinase 1 47 319 - -
Vian9g01534 360 CDD ZnMc_MMP 151 314 IPR033739 GO:0008237|GO:0008270
Vian9g01534 360 Pfam Putative peptidoglycan binding domain 56 112 IPR002477 -
Vian9g01534 360 Gene3D Collagenase (Catalytic Domain) 48 319 IPR024079 GO:0008237
Vian9g01534 360 Pfam Matrixin 152 314 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vian9g01534 360 PRINTS Matrixin signature 112 125 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vian9g01534 360 PRINTS Matrixin signature 182 197 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vian9g01534 360 PRINTS Matrixin signature 206 234 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vian9g01534 360 PRINTS Matrixin signature 267 292 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vian9g01534 360 PRINTS Matrixin signature 301 314 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vian9g01534 360 PANTHER MATRIX METALLOPROTEINASE 41 317 - -
Vian9g01534 360 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 144 317 - -
Vian9g01534 360 SUPERFAMILY PGBD-like 50 122 IPR036365 -
Vian9g01534 360 SMART col_5 148 315 IPR006026 GO:0006508|GO:0008237|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01534 Vian-Chr9 31556867 31557949 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01534 - K07999 gmx:100781237 562.377