Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01387 ATGGCGTTGTTGAGTGGCGGCACGCCATGGTCCAAGCTCGTTGCTCCTCCCATTTTCCACCGTTCTCACGCCCCTCGCACCTTCCTATTTTTCAAACGACGCCGTTTCTCAGTCTCTGCTCTCTCAGAGCAGCCCGTTCGCGTCCGTTTCGCTCCGTCTCCAACCGGAAACCTCCATGTCGGCGGTGCTCGAACGGCCCTCTTCAACTACTTGTTCGCCAGGTCCAAAGGTGGGAAATTTGTGCTCAGAATTGAGGACACTGACTTGGAGAGGTCCACAAGGGAGTCTGAGGAGGCCATGCTCAAAGATCTCTCTTGGCTTGGGCTTGATTGGGATGAAGGGCCTGGTGTTGGAGGGGATTATGGTCCTTACAGGCAGTCTGAGAGGAATTCTTTATACAAACAATATGCACAAAACCTACACCAATCTGGCCATGTTTATCGCTGCTTTTGTTCTAATGAGGAACTGGAGAAGATGAAGGAGGATGCTAAACTAAAGAATCTGCCACCGGTGTACACAGGTAAATGGGCCAGCGCAAGAGATGAGGAAGTTGAAGAAGAGCTGGCAAAAGGGACTCCTTATACATACCGGTTTCGAGTCCCTAAAGGAAGTTTAAAAATTAATGACTTAATTCGAGGCGAAGTTAGTTGGAACTTGGATACACTTGGAGATTTTGTGATAATGAGGAGTAATGGCCAGCCTGTTTATAACTTCTGTGTAACGGTAGATGATGCTACCATGGCAATTTCCCATGTTATCAGGGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCATTAATATATAAGGCATTAGGATTTCCCATGCCTTTCTTTGCACATGTTTCCTTGATTTTAGCTCCTGATCGGAGCAAATTATCAAAACGACATGGAGCAACATCAGTGGGACAGTTCCGGGAGATGGGATACCTACCGGAAGCAATGGTGAATTACCTAGCATTATTAGGTTGGGGAGATGGCACTGAAAATGAGTTTTATACTCTTGATCAACTTGTTGAAAAATTCACTATTGAACGTGTTAATAAAAGTGGTGCTATCTTTGACTCAACGAAGTTAAGGTGGATGAATGGTCAACATTTAAGAGGACGTCCATTGGAGGAGTTGACCAAACTTATTGGAGAGTACTGGAAGACATCTGGCATAGTCACAGTATCAGCTGGACCTTTTATTGATGAAACTGTTCAACTACTTAAGGATGGGATTGACTTGATAAATGATGCAGACAAGGCCCTTACTAACTTGCTTTCTTATCCTTTGCATTCTACTTTACAGAGCGATGAAGCAGAACCTCTCTTGCAAGATAATCTTTCTGAGTTTGCCGATAGCCTATTGGCAGCCTATGATAGTGGTGATCTGGTGGCAGCACTTGAAGACGGCCATGCCGGCTGGCAAAAGTGGGTGAAAGGCTTTGGTAAATCGCTTAAGCGGAAGGGAAAATCACTTTTCATGCCTCTTAGAGTTCTGTTGACTGGAAAACTTCATGGACCTGACATAGGGGCAAGTGTTGTATTGCTCTATAAAGCTGGAATTAGTGATGTAGTGGCTCCTGAAACTGGCTTTGTGACATTGGATGAAAGATTCAAAATGCTTAGGCAAATCAACTGGGAGACATTGTCCAAGGATCAACCTGTCAAAGAGACTGCTGCTTCTGTCTAA 1677 0.4508 MALLSGGTPWSKLVAPPIFHRSHAPRTFLFFKRRRFSVSALSEQPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAMLKDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYAQNLHQSGHVYRCFCSNEELEKMKEDAKLKNLPPVYTGKWASARDEEVEEELAKGTPYTYRFRVPKGSLKINDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPFFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPEAMVNYLALLGWGDGTENEFYTLDQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRGRPLEELTKLIGEYWKTSGIVTVSAGPFIDETVQLLKDGIDLINDADKALTNLLSYPLHSTLQSDEAEPLLQDNLSEFADSLLAAYDSGDLVAALEDGHAGWQKWVKGFGKSLKRKGKSLFMPLRVLLTGKLHGPDIGASVVLLYKAGISDVVAPETGFVTLDERFKMLRQINWETLSKDQPVKETAASV 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01387 558 CDD GluRS_core 46 368 IPR033910 GO:0006424|GO:0008270
Vian9g01387 558 Hamap Glutamate--tRNA ligase [gltX]. 45 528 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Vian9g01387 558 NCBIfam glutamate--tRNA ligase 46 514 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Vian9g01387 558 Pfam Anticodon binding domain 392 512 IPR045462 -
Vian9g01387 558 PANTHER GLUTAMATE--TRNA LIGASE 39 538 - -
Vian9g01387 558 Gene3D HUPs 38 370 IPR014729 -
Vian9g01387 558 Pfam tRNA synthetases class I (E and Q), catalytic domain 46 361 IPR020058 GO:0004812|GO:0005524|GO:0043039
Vian9g01387 558 SUPERFAMILY Nucleotidylyl transferase 46 354 - -
Vian9g01387 558 FunFam Glutamate--tRNA ligase chloroplastic/mitochondrial 428 521 - -
Vian9g01387 558 FunFam Glutamate--tRNA ligase, mitochondrial 39 370 - -
Vian9g01387 558 Gene3D - 427 520 IPR020751 -
Vian9g01387 558 PRINTS Glutamyl-tRNA synthetase signature 234 244 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vian9g01387 558 PRINTS Glutamyl-tRNA synthetase signature 63 74 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vian9g01387 558 PRINTS Glutamyl-tRNA synthetase signature 78 91 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vian9g01387 558 PRINTS Glutamyl-tRNA synthetase signature 250 258 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vian9g01387 558 PRINTS Glutamyl-tRNA synthetase signature 49 61 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vian9g01387 558 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 52 63 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vian9g01387 558 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 355 514 IPR008925 GO:0000049
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01387 Vian-Chr9 29492319 29498241 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01387 K01885 - gmx:100810730 1037.71