Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01361 ATGAAGGGTGGTGCTAAGAAAAAGGCCACGGCGGATGCTCCGGCCGAGGTGGTGGAGCCTTCTGGTGCTGCGGATTCGGGAAGTGGAGAGGGTGGAAGTGACAAAGTTCAAAGCTTTGAGGGGAACGAGGGTACCCAGTTGCGGAACGGTGAGGATGAGGAACCCCAGGTGGAGGATTCTGAAGGGGAGGGTGAGGAAGGAGAAGGGGAGGGGGAACAAGAGTATGGTGTGGAGGGAGATGAAGAAGAGGAAAATGCTGGTGGTGCTTTTCCAGGGGCTCAAGGTGTTGTTCTTGCTGAGAATTTTTATGAAGTTGAAGCTATACGTCGTAAGAGGGTGCGCAAGGGTCAAGTGCAATACTTTATCAAGTGGAATGGGTGGCCTGAGACAGCCAACACTTGGGAGCCACCAGAAAATCTAGTTTCTGTTCCTGATGTTGTTGAAGCTTTTGAGGAGAGCTTGAAGTCAGGAAGACACCGTAAGCGCAAACGCAAGCACGTGGTGCATCATACTCAACCCAAGAAGAGGCTGGAGCGTTCTACCACTCCATACAGTCTTCGACGCTTTTCCAGTACTGTTGGAAACCATTCACAGTCTGCTCTTCCTGTTCTTAGTGATGCTAGCCTTCCTGTTATTCCTGCCTTTCCTCAGACTGTTCTTTTTGCTGATGAATTGGGAAATGGTGCTGGCAGCAATCTTGAAAGTGCCACACCTGTTATTGTTAACAAATCTCCAATTGTTTTAGAACAAAATGTTGAAAGGAATGAGGAAAATGATTATGATCCTAAGCTTAGTGAGCTTAAAGCCTCTTCTGCCAGTGGGAATGATGCCGACAGGCTTGCAATACGAATTCCAGAGGCAATGCCTTCTGGTCCTGGGTTTGCTGGCAATAATGGTCAAACAGCTGCTAAACCAAAGGTGGTTCGCATGGAAACAAGTGAAAGTGGTCGCTGCCGAGGAGCCAAAAGGAGAAAATCTGGTTCTGTAAAGAGGTTCAACAAAGAGTTATATGCTGGTGAGCCTGCCAATACACAAAACCCAATTGGAGCAGCTGTTGGTACAGATGAGTCAGCACTACTATCACGGAATGCTGGTAGTGGTGGTAATCATGCCAGACCTGCTAGCAATATTGTAAAGATTATAAAACCAATAGGCTATTCAGCTTCCGTAGCCAGCGGAGCGCAGGATGTTTTGGTAACCTTTGTGGCTTCAAAGTCAGGATGGATGGGGTTTGATCCTGCAACTTCCCTTGGAAATTGTCTACTGGATGTTGTCATCAGTGTTCCAGGTTTCCTGAGAAACACCATTGTGGTTGTTTTGCTCCTTGTTACTGCCATGCTTGTTATGACTCTTACGTTGCATGTCATAACAGAGGAAAACAACAAAATACCCTCCTCCTATAGTGGACTGTTTGGAGAGGTTGCTGCGAGATGGATAACCAATTTTGCTGAAAAATTCAGAGTAGAAGATTCCTGGCTAAGCTCTGGTATCAGGCAGGTGAGACACAAGAGGTTGCCTGTGAAAATGGCAAAAAAATGTGCTGTGAGATTGCTCTTAGAACAGTAG 1566 0.4687 MKGGAKKKATADAPAEVVEPSGAADSGSGEGGSDKVQSFEGNEGTQLRNGEDEEPQVEDSEGEGEEGEGEGEQEYGVEGDEEEENAGGAFPGAQGVVLAENFYEVEAIRRKRVRKGQVQYFIKWNGWPETANTWEPPENLVSVPDVVEAFEESLKSGRHRKRKRKHVVHHTQPKKRLERSTTPYSLRRFSSTVGNHSQSALPVLSDASLPVIPAFPQTVLFADELGNGAGSNLESATPVIVNKSPIVLEQNVERNEENDYDPKLSELKASSASGNDADRLAIRIPEAMPSGPGFAGNNGQTAAKPKVVRMETSESGRCRGAKRRKSGSVKRFNKELYAGEPANTQNPIGAAVGTDESALLSRNAGSGGNHARPASNIVKIIKPIGYSASVASGAQDVLVTFVASKSGWMGFDPATSLGNCLLDVVISVPGFLRNTIVVVLLLVTAMLVMTLTLHVITEENNKIPSSYSGLFGEVAARWITNFAEKFRVEDSWLSSGIRQVRHKRLPVKMAKKCAVRLLLEQ 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01361 521 SMART chromo_7 102 155 IPR000953 -
Vian9g01361 521 ProSiteProfiles Chromo and chromo shadow domain profile. 103 162 IPR000953 -
Vian9g01361 521 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 1 406 IPR044251 GO:0006325|GO:0031507
Vian9g01361 521 MobiDBLite consensus disorder prediction 54 85 - -
Vian9g01361 521 MobiDBLite consensus disorder prediction 157 173 - -
Vian9g01361 521 ProSitePatterns Chromo domain signature. 120 140 IPR023779 -
Vian9g01361 521 MobiDBLite consensus disorder prediction 154 179 - -
Vian9g01361 521 MobiDBLite consensus disorder prediction 31 45 - -
Vian9g01361 521 MobiDBLite consensus disorder prediction 287 325 - -
Vian9g01361 521 PRINTS Chromodomain signature 100 108 IPR017984 -
Vian9g01361 521 PRINTS Chromodomain signature 113 127 IPR017984 -
Vian9g01361 521 PRINTS Chromodomain signature 128 140 IPR017984 -
Vian9g01361 521 CDD CD_CSD 103 152 - -
Vian9g01361 521 MobiDBLite consensus disorder prediction 1 92 - -
Vian9g01361 521 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 152 IPR023780 -
Vian9g01361 521 Gene3D - 97 158 - -
Vian9g01361 521 SUPERFAMILY Chromo domain-like 95 158 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01361 Vian-Chr9 28992845 29002257 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01361 - - gmx:100782342 467.233