Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01290 ATGGATTCTGAAATTTTGGATCGTGAAACAGGAGGTGATATTTCAGGGGAAGTGGGAGTGAACTATGGCCGATTGGGGACAAACCTTCCTCCGCCGAGAATCTCGGTGCGTCTGATACAGTCGCTTCTGAAAGCCAAGCGCGTGAAAATCTACGACGCAAACGCGGAAATTCTGGAAGCGCTTCGGAACACGGGAATTCAGGTGTCGATCATGCTACCGAATGAGCTTGTGGTGAACGCCTCCACCAACCAGACATTCTCGAACCAATGGGTTAGATCCAGCATCGTACCCTTCTACTCAGAAACGCTCATCCGCTACCTCCTCGTCGGCAACGAACTCATTAGCAGCACAGGCAACGAAACGTGGGCCCACATTGTTCCCGCGATGCACCGAATCTCACACTCTCTGAAAGTTTTCCGTTTGCATAAGGTAAAAATCGGAACTCCACACGCCATGGACGTTTTGCAATCGTCGTTTCCACCCTCAAACGGCACTTTCAGAAACGACATAGCACTTCCCATAATCAAGCCAATGTTACACTTCCTCCACAAAACACGCTCCTTCTTCTTCCTAGACGTGTACCCGTTTTTCGCGTGGGCCTCCGACCCGACCAACATTAACCTCCCTTACACTCTCTTCGAGTCCAGAAACATCACGGTAACGGACTCGTTAACTGGGTTAATCTACACTAACCTGTTCGACCAGATGGTTGACGCCGTTTATTTCGCCATGAAACGTCTCGGGTACCCGGGTATTCGGATCTTCATCGCCGAAACGGGTTGGCCCAATGGGGGAGACTTGGACCAAGTTGGCGCCAACGTCCACAATGCTGCCACGTATAACAGAAACGTAGTGAAGAGGCTTACCCAAAAACCGGTTTTGGGAACCCCGGCTCGACCGGGTTTGGTTCTTCCGGCTTTCATATTTTCGCTTTATAATGAGAACTTAAAGCCGGGTTTAGGTTCGGAGCGTCATTTTGGGTTGTTGTACCCGAACGAGTCGAGGGTTTACGACATTGATCTCTCCGGCAGGACTCCGGAGTCGGAGCTTGCGCCAGTACCGCCGGCAATGGATTATAAAGGGAAGGCGTGGTGTGTAGTGGCAGAGGGTGCGAATGTGACGGAGGTGGCGGCGGCGTTATCTTATGCTTGCTCGCAGGGAAATGGAACGTGTGACCCGATTCAACCTGGGAACCCGTGTTATAAACCCGATTCGGTGACGGGTCATGCCGATTACGCGTTCAGTGCTTATTGGGCGCAGTTTAGGCGCGTGGGAGGAACGTGCTTTTTCAATGGGCTTGCAACCCAAACAGCAAAGGATCCAAGTTATGCTTCTTGCAAGTTCCCGAGTGTGACGCTTTGA 1362 0.5154 MDSEILDRETGGDISGEVGVNYGRLGTNLPPPRISVRLIQSLLKAKRVKIYDANAEILEALRNTGIQVSIMLPNELVVNASTNQTFSNQWVRSSIVPFYSETLIRYLLVGNELISSTGNETWAHIVPAMHRISHSLKVFRLHKVKIGTPHAMDVLQSSFPPSNGTFRNDIALPIIKPMLHFLHKTRSFFFLDVYPFFAWASDPTNINLPYTLFESRNITVTDSLTGLIYTNLFDQMVDAVYFAMKRLGYPGIRIFIAETGWPNGGDLDQVGANVHNAATYNRNVVKRLTQKPVLGTPARPGLVLPAFIFSLYNENLKPGLGSERHFGLLYPNESRVYDIDLSGRTPESELAPVPPAMDYKGKAWCVVAEGANVTEVAAALSYACSQGNGTCDPIQPGNPCYKPDSVTGHADYAFSAYWAQFRRVGGTCFFNGLATQTAKDPSYASCKFPSVTL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01290 453 FunFam Glucan endo-1,3-beta-glucosidase 4 358 452 - -
Vian9g01290 453 Pfam X8 domain 364 435 IPR012946 -
Vian9g01290 453 FunFam Glucan endo-1,3-beta-glucosidase 14 16 346 - -
Vian9g01290 453 SUPERFAMILY (Trans)glycosidases 18 340 IPR017853 -
Vian9g01290 453 ProSitePatterns Glycosyl hydrolases family 17 signature. 252 265 IPR000490 GO:0004553|GO:0005975
Vian9g01290 453 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 437 IPR044965 GO:0004553|GO:0005975
Vian9g01290 453 Pfam Glycosyl hydrolases family 17 18 340 IPR000490 GO:0004553|GO:0005975
Vian9g01290 453 Gene3D - 357 451 - -
Vian9g01290 453 Gene3D Glycosidases 17 347 - -
Vian9g01290 453 SMART X8_cls 363 448 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01290 Vian-Chr9 27631159 27635459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01290 6 453 Glycoside Hydrolase AT4G14080 50.111 1.55e-172 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01290 - - ccaj:109805358 755.747