Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00879 ATGGATTATTCGGGCTACAACTACCAGCAGCAACAGCAACAACATTCCTATGGCTACGACCCTTCTCAGATCCAAATCCAACCCTACGATCAATCCTATGCTTATCAACAATACTACGCATACAATTCCCAATACGCCTATTTTTCCAACACACATCAAGGTCAGTTTCAATTCCAATCCGAACCCGCTCCTCTTCACCCTCCCGGCGTCAATCCCACCGTTCCGGAGTCCGCCCCGACTGGACCATCTCAATACAGAGGTAGGGGTGGCCGGGGTGGTAGACCATTTAGAGGGGCTGGTCGTGGTCGGGGCCATGGTAGGGGCCATGGTGTTGGAGGTGGTAGACACGCACCATCTCATTCTTCTGGTGCTGCTATTTCTCATGTAGCTGGTGCACCTGTTGCTGCTGGGACTAGTTCAGCGATAGAACCTTCATCATCAGTCTCTGTGCCAACACAATTACCTAAACAAGCTCGAGTGCAACCACCAGCACCACGTAAGGTGTGCTGTGAAATTTGTAAGGTTGAGTGCAATACTCCAGAAATCTTGGAGCAACACAAGAATGGGAAGAAACATCAGAAGAATATGAGGATGCATGAAGAATTGCAAAGGCGTAATGCTCTGAATGGACAACAGAATGCGCAAATTCCTACCTCTCAATTGAATTTGACAGATCAACCTAAGCAAGTTCAGGAGTCTGAGAATAATGGATCCCCAGCAGAAAATATGGGCTCTAGGGTTATAGTTAATAATCACGAGGACGAAACTCAGCAGCAGAATAATGTAGGAAACATTTCTGAGGCTTCTGAAGCACCTGAGGCAAAAAACACGGATAGCTCTGCCGCTAGAGGCCGAGGATTAAAGCGGAAGAAGAAAGGAGGAGGAAAAGGAGGTAAATACATGAGAACCAATGATGGTTTAAAGCCTGTGGAATCTGCACAAACCATGTCTTTTAGATGTGAGTTGTGTGACGTTAAATGTGAATCACAAATTGTTTACCAGAGCCATATGACTGGAAAAAAGCACTTATCGAAACTAAGGCGTGCTCATGATCCCCAAGCTTCATCTGGAGTAGGCCAGCAGCAAGCTCTGTCTGGAGCACTCTTGGGTCTTCAAGCCCTTTACCCTCCTGACATCAATGCTCTGTCTAATGCAATTAATGCTCAAGTACAACAAGGTGATAATGATCCACAGGTACTTTTGGCTCAGCTCCTGATGACTGTACTATCTCAAGCACAAGTTACAGCAGCAGCCCAAGTGACAGGTGTCACCGCTGCTCAGATGCCTGGACCCATATCTATGGCTGGACCAAGTTATGAACCCCAGTTGTTGCAAACACAAGTATCAGAAATCACAGCACATGCTAATTTGGATAATCCTTCTGCGGAAACAAAAATTGAGGTGTTACCTGATCCATCACTGGAGTCAAAAGCTCAGCAAGGCTCAAGTGTCAGCACCCAAATTGAAGGTGGTGGTTCTGAAACTAAACCGGTGTAA 1497 0.4643 MDYSGYNYQQQQQQHSYGYDPSQIQIQPYDQSYAYQQYYAYNSQYAYFSNTHQGQFQFQSEPAPLHPPGVNPTVPESAPTGPSQYRGRGGRGGRPFRGAGRGRGHGRGHGVGGGRHAPSHSSGAAISHVAGAPVAAGTSSAIEPSSSVSVPTQLPKQARVQPPAPRKVCCEICKVECNTPEILEQHKNGKKHQKNMRMHEELQRRNALNGQQNAQIPTSQLNLTDQPKQVQESENNGSPAENMGSRVIVNNHEDETQQQNNVGNISEASEAPEAKNTDSSAARGRGLKRKKKGGGKGGKYMRTNDGLKPVESAQTMSFRCELCDVKCESQIVYQSHMTGKKHLSKLRRAHDPQASSGVGQQQALSGALLGLQALYPPDINALSNAINAQVQQGDNDPQVLLAQLLMTVLSQAQVTAAAQVTGVTAAQMPGPISMAGPSYEPQLLQTQVSEITAHANLDNPSAETKIEVLPDPSLESKAQQGSSVSTQIEGGGSETKPV 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00879 498 MobiDBLite consensus disorder prediction 139 156 - -
Vian9g00879 498 MobiDBLite consensus disorder prediction 470 498 - -
Vian9g00879 498 SUPERFAMILY beta-beta-alpha zinc fingers 162 200 IPR036236 -
Vian9g00879 498 SUPERFAMILY beta-beta-alpha zinc fingers 312 348 IPR036236 -
Vian9g00879 498 SMART c2h2final6 318 342 IPR013087 -
Vian9g00879 498 SMART c2h2final6 168 192 IPR013087 -
Vian9g00879 498 Gene3D Classic Zinc Finger 152 201 - -
Vian9g00879 498 Gene3D Classic Zinc Finger 299 349 - -
Vian9g00879 498 SMART ZnF_U1_5 165 199 IPR003604 GO:0003676|GO:0008270
Vian9g00879 498 SMART ZnF_U1_5 315 349 IPR003604 GO:0003676|GO:0008270
Vian9g00879 498 Pfam Zinc-finger of C2H2 type 170 192 - -
Vian9g00879 498 Pfam Zinc-finger of C2H2 type 318 342 - -
Vian9g00879 498 MobiDBLite consensus disorder prediction 137 162 - -
Vian9g00879 498 MobiDBLite consensus disorder prediction 220 308 - -
Vian9g00879 498 MobiDBLite consensus disorder prediction 220 276 - -
Vian9g00879 498 MobiDBLite consensus disorder prediction 58 125 - -
Vian9g00879 498 MobiDBLite consensus disorder prediction 475 492 - -
Vian9g00879 498 PANTHER OS06G0651300 PROTEIN-RELATED 7 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00879 Vian-Chr9 15098810 15107738 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00879 - - vra:106780092 691.419