Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00832 ATGGAAACTTGGGAAAGCTCTGGCGATGTTATTGAAATCAATTCTCAAAGTCTGGGAGATGGTGGTAGTAATGCACTGATTTTGCCTGCAAAGAGGATGAAGAAAAGGAAAGGGAAGGATAAGGATCATCGAAAAGCTAAATCAAATAAGAAACAGAAATTGAGCAAACCTCAGAAGAGGAAGAAGAAGTTTGAGGATGACAAGGAGAAACAACGACTGCAGGAAAAAGCTATTAAGACAATGAACGAGAACACACTTCCAGAGTATGCTTATCATCTTTTGCAGTCTTCATGCAATATAAATCGGAATGAGACTATGAAGGAAAAGCGTAGGAGGGCTGTTCATTTATTGAAAGAAGGATTGAAGGTTCCATATGATGGACTGTATAAGAAACCTGAGATGGACGAGATTCATTTAGCACAGGATGATGAAGTTGAAGAAAATGACATTCAAATTCAACCCGTTAGATCAGAAGAAGTCTTAAATACAACTTCAACACCTCTGGAGTCCTCTGAAGAACCAGTTCATGGCAATGAAGTTGAAAATTATAAATATGTTTCTGGAAATCTTGCTGACATTTCCATTGACAAACAACTTTATGAAATCAGAAGTTCTCCATTGTCTTGTTCGATCAATGAAATAAAAAACACCAATTTAAAGAATAGAACAGATGAGAACCATAATCTCAATGGATTGAGCAACCTTGATTATTCTGCACCAAGACCTTCAAATGTTCCTACTGTTGTGCATGTGTATAGACCAAGTGAAGTTGAAGATAAAAGAAAGGATTTGCCTATAGTTATGATGGAGCAAGAGATAATGGAAGCTATAAATGACTGTTCGAGTGTTATCATATGCGGAGAAACTGGGTGTGGTAAAACAACTCAAGTTCCTCAGTTTCTTTATGAAGCTGGTTATGGCTCAAGTAAGGGTATCATTGGTGTTACTCAACCACGTCGAGTGGCTGTTCTTGCTACAGCTAAGCGTGTGGCATATGAGCTTGGTCTTTATTTAGGGAAGGAGGTTGGTTTTCAAGTCAGATATGACAAGAAGATTGGTGAAAATTGTTCTATCAAGTTTATGACAGATGGAATTTTGCTACGAGAAGTTCAGAATGATATATTGTTGAGACGTTATTCTGTCATAATTCTTGATGAGGCCCATGAGAGGAGCTTGAACACGGACATTTTGATCGGGATGCTCTCACGTGTAATTAAAACTCGCCAAATGATTTATAATGAACAACAGAAGATGATACTTTCAGGGGAAACTATAAGTCCTGAAAAAATGATTTTTCCCTTAAGACTTGTGCTTATGAGTGCCACCTTGCGAGTACAAGACTTCACTTCTGGGAAGTTATTCCATACTGCTCCACCTGTTATAGAAGTTCCTACAAGGCAATTTCCAGTAGCAGTATACTTCTCAAAGAAAACAGAGAAAACAGATTACATTGGAGAAGCATATAAGAAGGTCTTGGCAATTCACAAGAGGTTGCCACCTGGGGGCATACTTGTCTTTGTTACTGGGCAAAGGGAAGTAGAGGACTTGTGTAGGAAATTACGGAAAGCATCAAGGGAGTTTGTCAAGAAAAAAGTTGAAGGGTCTGTGCAAACTGATAGCACTGTGATCAATGAAACAAACTTTGTTGAGGGAGTAAATATTAGTGAGATCAATGAAGCGTTTGAGGTTCAGGGAAGTTCATCCATCCAGCAAACTGATCGATTTAGTGGTTATGATGAAGATGAAGATAATGCAAATGAGAATGAATCTGAATTTTCGTATGACACTGAAACAGAGAGTGAACTGGAATTTGATGATGATAATCTTGTGCTTCCGGAGAACAATAGTAATATTGTGGATGCCTTAGGACAGGCGGGAAGCCTTGCTTCACTAAAGGCTGCTTTTGAAAAATTGTCTTGGCAGGCCACATCAAGCTCCTCAAATGAAGAGAAGACAATTTCTGCGAACATAGAAAGTAATTTAGAACAATCAAAAGTTCCCAGGGAGAAAACAACTAAAGAAATTTGCAGTACTCCAGGTGCACTCTGTGTTCTACCTCTGTATGCCATGCTTCCTGCAGCAGCTCAACTACTTGTATTTGAACAAGTTGGGGAGGGAGAGCGGCTTGTAGTTGTTGCTACAAATGTTGCTGAAACATCTTTAACTATCCCAGGGATAAAGTATGTGGTTGATACCGGAAGAGAAAAGGTGAAGAATTATGACCCCTCTAATGGCATGGAGACATATGAAATACAATGGATAAGTAAGGCATCTGCTGCACAGCGTGCAGGCAGATCTGGAAGAACTGGACCTGGACACTGTTACCGTCTCTATTCTTCTGCAGCCTTTAATAATGAATTTCCTGAGCACTCTCCTGCCGAAGTTGAGAAAGTACCTGTTCATGGTGTTGTCCTTCTCTTAAAATCCATGCATATTACAAAGGTTGCAAATTTCCCATTTCCTACATCACTTAAAGCTGCTTCTTTGCTCGAAGCTGAAAATTGCTTGAAATCTCTTGAAGCACTTGATAGCAAGGATGAACTTACACCATTGGGAAAAGCCATGGCACATTATCCCTTGAGTCCTCGTCATTCTAGAATGCTCCTCACTGTTATTAAAAACACAAGACATGAGCTTAAATGTAATTTAAATTTGCTTTTGGCATATGCTGTTGCAGCTGCTGCGGCATTGAGCTTGTCAAATCCTTTTATAATGCAATATGAAGATGATAACAGCAGAGATTCAAAGATGTCTGAGAAATCTGGAATGGGATATGGTGAGAAAGACTTTGATAAAAAGGGAAAGTCAAGCAGAAAGAAACTAAAAGAAACGGCAAAAGTTGCACGAGAAAAATTTCGAGTTGTCACTAGTGATGCCCTCACCATAGCATACGCTTTACAGTGTTTTGAACATTCACAGAAATCAGTAGAATTCTGTGATGACTATGCTTTGCATTTCAAAACCATGGATGAAATGTCCAAACTTCGACAACAGCTACTTAAACTGGTCTTTTATCAGATTGATAAAGGTGGTCTTGAAGAAGAGTACTCATGGATCCGTGGAACATTAGAGGATGTTGAATGTGCTTGGCAGGTTTCTTCTGAAAAGTATCCACTTTCTCTTGTTGAGGAAAGGCTAATCTGTGAAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCTAAACGTATTACATCTTTTTCTAGGGCCTTCGATGGAGAGAAAACCTCTCGTGCCTTAAGGTATCAGTCATGCATGGTAGATGAAAGTGTTTTACTTCATCGTTGGTCATCACTTTCCACTGTGGGCCCTGAGTATTTGGTTTATAATGAACTATTGGAGACCAAAAGACCAAAGAAAGAAGAGATAAGTACCAAGAGAGCGTATATGCATGGGGCAACAAGTGTAGAGCCAGCTTGGCTTGTTGAGCATGCTAAGTCTTCATGTGTCTTCTCGGCTCCTCTGAAGGATCCTAGATCTTATTATGATGCCCAGACTGACCAAGTAAAATGTTGGGTAACCCCAACCTTTGGCCGTTTCTCTTGGAAGCTTCCAATGCATTCATTGCCCATTAGCAATGATGAAGATCGGGTGCAAGTGTTTGCCTATGCTTTGCTTGAAGGCCAGGTGTGTCCCTGTTTAAAATCTGTTCGAAAATATATGTCAGCTCCCCCTGAAAGTATCATGAAGAAAGAAGCATTTGGTCAGAAAAGGGTGGTAAATCTTGTAAGCAAGTTAAAAAGCAGGCTGATTCATAGCTCTGCTGTGCTAAGAACGGTGTGGAAGGAGAATCCAAGGGAACTATATGCAGAAATTTTGGATTGGTTTCAGCATAGTTTTCACAAGCACTTTGAAGAGTTATGGCTACAAATGCATAATGAATTGCTTATGGGGACACAACAAGGCCCTAAGCATAAAAGTTCTAGAAAAAAGAAAGGAAAATCTAAAGAACCATCATAA 3957 0.3965 METWESSGDVIEINSQSLGDGGSNALILPAKRMKKRKGKDKDHRKAKSNKKQKLSKPQKRKKKFEDDKEKQRLQEKAIKTMNENTLPEYAYHLLQSSCNINRNETMKEKRRRAVHLLKEGLKVPYDGLYKKPEMDEIHLAQDDEVEENDIQIQPVRSEEVLNTTSTPLESSEEPVHGNEVENYKYVSGNLADISIDKQLYEIRSSPLSCSINEIKNTNLKNRTDENHNLNGLSNLDYSAPRPSNVPTVVHVYRPSEVEDKRKDLPIVMMEQEIMEAINDCSSVIICGETGCGKTTQVPQFLYEAGYGSSKGIIGVTQPRRVAVLATAKRVAYELGLYLGKEVGFQVRYDKKIGENCSIKFMTDGILLREVQNDILLRRYSVIILDEAHERSLNTDILIGMLSRVIKTRQMIYNEQQKMILSGETISPEKMIFPLRLVLMSATLRVQDFTSGKLFHTAPPVIEVPTRQFPVAVYFSKKTEKTDYIGEAYKKVLAIHKRLPPGGILVFVTGQREVEDLCRKLRKASREFVKKKVEGSVQTDSTVINETNFVEGVNISEINEAFEVQGSSSIQQTDRFSGYDEDEDNANENESEFSYDTETESELEFDDDNLVLPENNSNIVDALGQAGSLASLKAAFEKLSWQATSSSSNEEKTISANIESNLEQSKVPREKTTKEICSTPGALCVLPLYAMLPAAAQLLVFEQVGEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDPSNGMETYEIQWISKASAAQRAGRSGRTGPGHCYRLYSSAAFNNEFPEHSPAEVEKVPVHGVVLLLKSMHITKVANFPFPTSLKAASLLEAENCLKSLEALDSKDELTPLGKAMAHYPLSPRHSRMLLTVIKNTRHELKCNLNLLLAYAVAAAAALSLSNPFIMQYEDDNSRDSKMSEKSGMGYGEKDFDKKGKSSRKKLKETAKVAREKFRVVTSDALTIAYALQCFEHSQKSVEFCDDYALHFKTMDEMSKLRQQLLKLVFYQIDKGGLEEEYSWIRGTLEDVECAWQVSSEKYPLSLVEERLICEAICAGWADRVAKRITSFSRAFDGEKTSRALRYQSCMVDESVLLHRWSSLSTVGPEYLVYNELLETKRPKKEEISTKRAYMHGATSVEPAWLVEHAKSSCVFSAPLKDPRSYYDAQTDQVKCWVTPTFGRFSWKLPMHSLPISNDEDRVQVFAYALLEGQVCPCLKSVRKYMSAPPESIMKKEAFGQKRVVNLVSKLKSRLIHSSAVLRTVWKENPRELYAEILDWFQHSFHKHFEELWLQMHNELLMGTQQGPKHKSSRKKKGKSKEPS 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00832 1318 Pfam DEAD/DEAH box helicase 271 447 IPR011545 GO:0003676|GO:0005524
Vian9g00832 1318 MobiDBLite consensus disorder prediction 910 937 - -
Vian9g00832 1318 SMART helicmild6 670 770 IPR001650 -
Vian9g00832 1318 Gene3D - 213 466 IPR027417 -
Vian9g00832 1318 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 274 461 IPR014001 -
Vian9g00832 1318 MobiDBLite consensus disorder prediction 30 58 - -
Vian9g00832 1318 SMART ultradead3 262 473 IPR014001 -
Vian9g00832 1318 FunFam ATP-dependent RNA helicase DEAH13 467 572 - -
Vian9g00832 1318 PANTHER ATP-DEPENDENT RNA HELICASE 166 1149 - -
Vian9g00832 1318 MobiDBLite consensus disorder prediction 1297 1318 - -
Vian9g00832 1318 MobiDBLite consensus disorder prediction 582 597 - -
Vian9g00832 1318 MobiDBLite consensus disorder prediction 1 22 - -
Vian9g00832 1318 FunFam ATP-dependent RNA helicase DHX37/DHR1 221 466 - -
Vian9g00832 1318 Pfam Helicase associated domain (HA2) 832 961 IPR007502 GO:0004386
Vian9g00832 1318 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 380 389 IPR002464 -
Vian9g00832 1318 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 630 811 IPR001650 -
Vian9g00832 1318 MobiDBLite consensus disorder prediction 1 71 - -
Vian9g00832 1318 MobiDBLite consensus disorder prediction 565 597 - -
Vian9g00832 1318 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1047 1145 IPR011709 -
Vian9g00832 1318 Gene3D - 645 791 IPR027417 -
Vian9g00832 1318 Gene3D - 467 555 IPR027417 -
Vian9g00832 1318 Gene3D - 821 926 - -
Vian9g00832 1318 Pfam Helicase conserved C-terminal domain 681 770 IPR001650 -
Vian9g00832 1318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 874 IPR027417 -
Vian9g00832 1318 SMART ha2_5 831 963 IPR007502 GO:0004386
Vian9g00832 1318 CDD SF2_C_RHA 679 778 - -
Vian9g00832 1318 FunFam ATP-dependent RNA helicase DEAH13 817 947 - -
Vian9g00832 1318 CDD DEXHc_DHX37 264 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00832 Vian-Chr9 12725976 12731803 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00832 K14780 - gmx:100788201 2120.12