Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00781 ATGAACGGCGGTGGAGGTGACCTGCCACTGCCGCCGACGCCCTCTAACGGCGGTGAGTTCCTCCTCTCACTCATCCAACGTCCCCACCATCACCACCCACACCCGCGGCAACAGTCTCCGGCGATAGATCCCGCCGTCGCCGTCGTCGGTCCAACGATCCCCGTTGGCTCGCCGCAGTGGCCAATCGCCGGTGCCGATCACCCGCACGCCCTCCCTCTCCCTCACCATCTTCCTCCTTGGTCCCACACTCTCTCTTCTCCGCTTTACCCTCCGAACTTTTTTGGGTTGCCCCATAACCCGTTTCCCCCTCCTCGGAACCACTTCCCCGTCACCCCGAACTCCGTCACTAACGGCGTCAACGTTAACGCTGGCCTCACCCACGATCTGCGAAAACTAGGGTTTCCCATCGAAGAAAAAAACAGCAAGGTCGATGGTTTCGTCCAGCAGCAAGAACTGAAGCTGCAGTTCGGGTCTTTGCCCACGGTTGCGTACTCTGCATCTGAAGTTTCTCCCAATGTGGACTCGTTGCTGAATTTGAAGTTCAACAGAGGGTACAACGGGTTCGACAGGAACTTGCATGTCGATCACCCCAGTTCTAATTCCAGTGGGAATTTGGTTCTTCAGGGTAATCATGATGTTGTGGACAGGGAAAGAAGAGGACTTGAGGGTTATACGGCTAGTGGGTCGTTGTCTCATGAGGCTAGTAGGGTTCCACCAGGGTTTGGGAACAGGAATAGAGGGAAGGGTTTGGAGGGTAGGAAAGATGGTAGGGTGGGGGGTGGTGAAATGGGTGGGGTTGGAGGTAGAATTGAGAATTTGTATGGTAAGAGGGAAGGTGTGAGAATGGTTTCTGGTGAAAGAAGCAACGTTAGAGGCAATGTAGTTCGTGAAATGGGGCTTGTTGATCAGCTTGATCGCCCTGGGCCACCTGCTGGGAGTAACTTGCATTCCAGTGGTGTGAATGAGACCGGTGGAAGTGGAGCTCATGTTGATGTCCTTGGGGAGAAGTTGGCTGATTCATTGCTGATAGAGGATGACTCTGATGACAGGACTAACTCAAGGCAACGCCGCGCCACACGAGAGAAGGATGCCAGAGCATCGGATTCAAGAGGGCAGCAGATCCTAAGCCAGCGGGCAAGAATGTATAAAAGGCAGTTAGTTTGTCGAAGGGACATTGATGTTCTTAATGTTCCTTTCCTTGCAATATACGAGTCTCTAATACCTCCTGAAGAAGAAAAGCAGAAGCAAAAGCAATTAATGGCATTGTTGGAGAGATTAGTTAGCAAAGAATGGCCAGCAGCTAAGCTTTATCTCTATGGATCATGTGCTAATTCGTTTGGTGTTTCTAAAAGTGACATTGATGTTTGCCTTGCTATTGAGGAAGCAGACATGGACAAAGCTAAGATTATAATTAAATTGGCAGATATTTTGCAATCAGATAATCTACAGAATGTGCAGGCATTGACGCGTGCACGGGTTCCCATAGTAAAGCTCATGGATCCAGTGACAGGAATCTCTTGTGACATATGCATTAACAATCTTCTAGCTGTTGTGAATACAAAGCTTCTTCGGGATTATGCACTCATAGATCCAAGGTTACGGCAGCTAGCCTTCATTATCAAACATTGGGCTAAGTCAAGAAGAGTCAATGAAACTTACCATGGGACTCTGTCTAGCTATGCGTATGTTTTGATGTGCATTCATTATTTACAAATGAGAAGACCTGCCATCCTTCCATGCTTGCAGGAGATGGAGACAACGTATTCTGTGACTGTGGATGATATTAATTGTGCTTTCTTTGATAAAGTTGAAAAACTTGGTGATTTTGGTCGCCATAACAAGGAAACAATTGCTCAGCTTGTGCGGGGATTTTTCCACTACTGGGCATATTGTCATGATTATGCAAATTCTGTTATATCTGTACGCACAGGAAGCATAATCAGCAAACGGGAGAAGGACTGGACTAGAAGGATTGGCAATGATCGGCATTTGATATGTATAGAGGATCCTTTTGAAACATCTCATGATCTTGGGCGAGTGGTAGATAAATATAGCATCAAAGTTCTGAGGGAAGAGTTTGAACGTGCTGCCGAAATTATGCAGAATGATCCAAATCCGTGTATTAAACTTTTTGAGCCGTATGTTCCTAGTTGA 2154 0.4759 MNGGGGDLPLPPTPSNGGEFLLSLIQRPHHHHPHPRQQSPAIDPAVAVVGPTIPVGSPQWPIAGADHPHALPLPHHLPPWSHTLSSPLYPPNFFGLPHNPFPPPRNHFPVTPNSVTNGVNVNAGLTHDLRKLGFPIEEKNSKVDGFVQQQELKLQFGSLPTVAYSASEVSPNVDSLLNLKFNRGYNGFDRNLHVDHPSSNSSGNLVLQGNHDVVDRERRGLEGYTASGSLSHEASRVPPGFGNRNRGKGLEGRKDGRVGGGEMGGVGGRIENLYGKREGVRMVSGERSNVRGNVVREMGLVDQLDRPGPPAGSNLHSSGVNETGGSGAHVDVLGEKLADSLLIEDDSDDRTNSRQRRATREKDARASDSRGQQILSQRARMYKRQLVCRRDIDVLNVPFLAIYESLIPPEEEKQKQKQLMALLERLVSKEWPAAKLYLYGSCANSFGVSKSDIDVCLAIEEADMDKAKIIIKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYALIDPRLRQLAFIIKHWAKSRRVNETYHGTLSSYAYVLMCIHYLQMRRPAILPCLQEMETTYSVTVDDINCAFFDKVEKLGDFGRHNKETIAQLVRGFFHYWAYCHDYANSVISVRTGSIISKREKDWTRRIGNDRHLICIEDPFETSHDLGRVVDKYSIKVLREEFERAAEIMQNDPNPCIKLFEPYVPS 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00781 717 FunFam Terminal uridylyltransferase cid1 530 698 - -
Vian9g00781 717 PANTHER POLY A POLYMERASE CID PAP -RELATED 345 705 - -
Vian9g00781 717 MobiDBLite consensus disorder prediction 1 20 - -
Vian9g00781 717 MobiDBLite consensus disorder prediction 301 328 - -
Vian9g00781 717 Pfam TUTase nucleotidyltransferase domain 410 509 IPR045100 GO:0016779
Vian9g00781 717 Pfam Cid1 family poly A polymerase 617 675 IPR002058 -
Vian9g00781 717 Gene3D Beta Polymerase, domain 2 416 529 IPR043519 -
Vian9g00781 717 MobiDBLite consensus disorder prediction 343 368 - -
Vian9g00781 717 MobiDBLite consensus disorder prediction 222 264 - -
Vian9g00781 717 CDD NT_PAP_TUTase 417 527 - -
Vian9g00781 717 SUPERFAMILY PAP/OAS1 substrate-binding domain 531 703 - -
Vian9g00781 717 Gene3D - 530 698 - -
Vian9g00781 717 FunFam Terminal uridylyltransferase cid1 416 529 - -
Vian9g00781 717 SUPERFAMILY Nucleotidyltransferase 393 527 IPR043519 -
Vian9g00781 717 MobiDBLite consensus disorder prediction 343 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00781 Vian-Chr9 10763001 10768381 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00781 - - gmx:100812787 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00781 9 10763001 10768381 Vian9g00781 9 10763001 10768381 ECH