Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00564 ATGTGGAAGTTACTGCACCTCAACCAACTCTTCCACCCCACATCAACCTCCGCCACCAATCCCCTTGCCGTCGCGGTCACCGGCGCTTCCTTCGCCCTCCTCCTCCTCGCTCTCTCTATCCTCTCTGCCCTTCTTTACTGTCTCCCCAGACGCAAAACCTTCTCTACTGACCCCACCGTCAACCTCTTTCACTGGGATGCCGCCGCCGCCTGTTGGAAAGCGAGGAACACCATGGACTCGCCGGAGCTCCAGCCCCTGCTCGCGGGAAAGGCCTGGGTGGCGGTGGTGGACGACGAAGAACAGCAACTCTGCTCGCCGAGAGGGAAGATTACAGAATCTGAACTTGTATGCGAACCAGAGGAAGAAAATTCTGAAAATGATGATGCTGGAGTATCTGATAATGAAGCTGAAACAGATATTTTACAACATTTTCTAATTTCACTCAGAGAAGAAAAGAAGAAACAGGCAGCCAAGTTGGAAGAAGTGCTGAATTTCTTGAATGAAGATATTAAGGAGGTAGAAAGAAGCTACTCACTTGGGACAGATTCAGTATTTCCTTTGGCACCAATGAAAAATCCAGAAGTGAAAGGAAACGATGCACACTCTCAAGATTCTTCCAATTCAGACATCAGTATAATGATTCGAAGGTCATTTGTGGATGAAGAAAGATTAATGAGTAATATAAATGAGCTAGAGAGTTCATACTTTGCGGCAAGATCCCAAGTTCTGCCCAAAGAGGCTTCATCTGTTTCAAGCAATGTGATGGAAAGTGAATGGAGGCATGTAGAGAATGTTGATAAGGAGCCAAGAAGAATTCAGAGTTCTGTTGCTTGTCTAGAATCCTTCTGTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAAGTTTGAAGAGTGTGGCAGATTAGGAAATAGTTCTGGAAATATAATGTGTGGTTTAAGTTTTGACCGTGATGAAGATTACATTGCAGCAGGAGGAATTTCAAGGAAAATCAAGATTTTTGAGCTCAGTAGTGCTATTTCAGGTGATTCTGATGACATCCAGTACCCAGTAGTTGAGATGTCAAATGAATCAAAGATTAGTAGTGTGTGCTGGAACACTTGCATACAAAATCATCTGGCATCTGCTGACTATGATGGCGAGATTAAGATGTGGGATGCAGGCACTGGTCAGCTTTTATCTCAATACATAGAGCACGAAGAGAGAGCTTGGTCTGTTCACATTTCTCCGTCTGACCCAAAAATGTTTGCTAGTGGAAGTGATGACTGTTCTGTCAAAGTTTGGAATATCAATGAGAGAAATTCTGTGGAAACTATCAGTATGGATGCCAATATATGCTGTGTTCAGTTCTCTCCTCCATCAACAAATCTTTTATTTTTTGGGTCATCTGATCACAAGGTTTATGGTTATGATCTTCGTCATACTAGAATCCCTTGGTGCTCATTAGCTGGTCATAGGAAATCTGTGAGCTATGTAAAATTTATAGATGCTGGAGCGGTTGTCACAGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTGAAGAAAGCCAGTTCTTCTGCTTTGTCTTCTGATGCTTGTGTCTTAACCTTTAAAGGACATAGAAATGAAAAGAATTTCGTGGGATTGTCTGTTTCGGGTGGATACATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATCACTTCCAGTGCCAATTGCTACTCATGAATTTGAGCCAATTGATCCCATTTCTGGTGATCCAGATAATAGACAGTTTGTTTCTAGTGTTTGCTGGAGAAAGAAGTCTAACATGCTTGTAGCCGCCACCTCAGTTGGAATTATTAAACTATTTCAGATGGTCTGA 1854 0.4283 MWKLLHLNQLFHPTSTSATNPLAVAVTGASFALLLLALSILSALLYCLPRRKTFSTDPTVNLFHWDAAAACWKARNTMDSPELQPLLAGKAWVAVVDDEEQQLCSPRGKITESELVCEPEEENSENDDAGVSDNEAETDILQHFLISLREEKKKQAAKLEEVLNFLNEDIKEVERSYSLGTDSVFPLAPMKNPEVKGNDAHSQDSSNSDISIMIRRSFVDEERLMSNINELESSYFAARSQVLPKEASSVSSNVMESEWRHVENVDKEPRRIQSSVACLESFCEGLCKFARYSKFEECGRLGNSSGNIMCGLSFDRDEDYIAAGGISRKIKIFELSSAISGDSDDIQYPVVEMSNESKISSVCWNTCIQNHLASADYDGEIKMWDAGTGQLLSQYIEHEERAWSVHISPSDPKMFASGSDDCSVKVWNINERNSVETISMDANICCVQFSPPSTNLLFFGSSDHKVYGYDLRHTRIPWCSLAGHRKSVSYVKFIDAGAVVTASTDNSLKLWDLKKASSSALSSDACVLTFKGHRNEKNFVGLSVSGGYIACGSESNEVYCYHKSLPVPIATHEFEPIDPISGDPDNRQFVSSVCWRKKSNMLVAATSVGIIKLFQMV 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00564 617 Gene3D - 282 617 IPR015943 GO:0005515
Vian9g00564 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 430 - -
Vian9g00564 617 ProSitePatterns Trp-Asp (WD) repeats signature. 499 513 IPR019775 -
Vian9g00564 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 437 IPR001680 GO:0005515
Vian9g00564 617 PANTHER PROTEIN SPA1-RELATED 2 109 617 IPR044630 GO:0009640
Vian9g00564 617 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Vian9g00564 617 PRINTS G protein beta WD-40 repeat signature 499 513 IPR020472 -
Vian9g00564 617 PRINTS G protein beta WD-40 repeat signature 415 429 IPR020472 -
Vian9g00564 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 394 IPR001680 GO:0005515
Vian9g00564 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 481 514 - -
Vian9g00564 617 SUPERFAMILY WD40 repeat-like 304 615 IPR036322 GO:0005515
Vian9g00564 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 481 521 IPR001680 GO:0005515
Vian9g00564 617 Pfam WD domain, G-beta repeat 389 428 IPR001680 GO:0005515
Vian9g00564 617 Pfam WD domain, G-beta repeat 480 512 IPR001680 GO:0005515
Vian9g00564 617 Coils Coil 149 176 - -
Vian9g00564 617 SMART WD40_4 431 470 IPR001680 GO:0005515
Vian9g00564 617 SMART WD40_4 388 428 IPR001680 GO:0005515
Vian9g00564 617 SMART WD40_4 474 512 IPR001680 GO:0005515
Vian9g00564 617 SMART WD40_4 346 385 IPR001680 GO:0005515
Vian9g00564 617 SMART WD40_4 523 562 IPR001680 GO:0005515
Vian9g00564 617 SMART WD40_4 294 334 IPR001680 GO:0005515
Vian9g00564 617 SMART WD40_4 573 615 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00564 Vian-Chr9 6527905 6532256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00564 392 575 Miscellaneous Gene Families AT5G08390 25.269 1.10e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00564 K16240 - gmx:100802144 729.939