Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00562 ATGGCTTCGGAGAATGTGAAGACTGGGGATTCCGCCGTCACCACCATCGTCAACCTCGCCGAGGAAGCCAAGCTCGCCCGAGAAGGCGTAGTCAAGGCTCCCAACTACGCGCTCGCCAGCATCTGCAAGTCACTTGTTGCGGGTGGCGTCGCCGGAGGAGTGTCAGTTCCGATTGGATCACTTGCGATTAGTGAAAATCACTCAGAGTGTTGGGGTTTTGGAATAAGGTCACGTACTGCAGTTGCTCCTCTGGAACGGTTGAAAATTTTGCTACAGGTCCAAAACCCTCATAACATTAAATACAATGGAACTATACAAGGCCTAAAATATATATGGAGAACTGAAGGTCTCCGTGGACTTTTCAAAGGGAATGGTACTAACTGTGCTCGAATAGTCCCTAACTCTGCTGTGAAGTTCTTCAGTTATGAGCAAGCTTCTAAAGGTATACTGTACATGTATCAGCAGCAAACTGGAAATGAGGATGCTCAACTGACTCCTGTTTTACGTCTTGGAGCTGGAGCTTGTGCTGGAATAATTGCTATGTCTGCAACTTATCCAATGGACATGGTCCGTGGCCGTATTACTGTGCAGACTGAGGCATCCCCATATCAGTACAGAGGAATGTTTCATGCTTTGTCTACTGTGCTCAGGGAAGAAGGTCCCCGTGCTTTATATAAGGGCTGGCTTCCTTCAGTTATTGGAGTTATTCCTTATGTAGGTCTCAACTTTGCTGTGTACGAGTCTCTAAAAGATTGGTTAGTTAAATCCAACGCATTTGGTCTTGCTGATAATTCGGAGTTGGGTGTGACAACACGCCTGGCTTGTGGTGCTGCTGCTGGAACTGTTGGACAAACTGTTGCTTACCCTCTTGACGTTATTCGTAGAAGAATGCAGATGGTTGGTTGGAACCATGCTGCTTCTGTTCTAACTGGTGATGGAAGAGTCAAAGTCCCGCTTGAATACACTGGAATGATTGATGCATTCAGGAAAACTGTGCAGCATGAAGGATTTGGTGCATTATACAAGGGTCTTGTGCCCAACTCTGTAAAGGTGGTCCCATCGATAGCTCTCGCTTTTGTGACATACGAGATGGTGAAGGACATTTTAGGAGTTGAGATCAGAATATCAGACTGA 1134 0.4638 MASENVKTGDSAVTTIVNLAEEAKLAREGVVKAPNYALASICKSLVAGGVAGGVSVPIGSLAISENHSECWGFGIRSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGLRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYMYQQQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTEASPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLVKSNAFGLADNSELGVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNHAASVLTGDGRVKVPLEYTGMIDAFRKTVQHEGFGALYKGLVPNSVKVVPSIALAFVTYEMVKDILGVEIRISD 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00562 377 SUPERFAMILY Mitochondrial carrier 73 364 IPR023395 -
Vian9g00562 377 PRINTS Mitochondrial carrier protein signature 276 298 IPR002067 GO:0055085
Vian9g00562 377 PRINTS Mitochondrial carrier protein signature 225 243 IPR002067 GO:0055085
Vian9g00562 377 PRINTS Mitochondrial carrier protein signature 123 143 IPR002067 GO:0055085
Vian9g00562 377 PRINTS Mitochondrial carrier protein signature 179 197 IPR002067 GO:0055085
Vian9g00562 377 PRINTS Mitochondrial carrier protein signature 48 61 IPR002067 GO:0055085
Vian9g00562 377 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 148 IPR018108 -
Vian9g00562 377 ProSiteProfiles Solute carrier (Solcar) repeat profile. 267 368 IPR018108 -
Vian9g00562 377 PANTHER SOLUTE CARRIER FAMILY 25 40 371 - -
Vian9g00562 377 Gene3D Mitochondrial carrier domain 72 371 IPR023395 -
Vian9g00562 377 FunFam Mitochondrial substrate carrier 72 371 - -
Vian9g00562 377 ProSiteProfiles Solute carrier (Solcar) repeat profile. 164 252 IPR018108 -
Vian9g00562 377 Pfam Mitochondrial carrier protein 266 369 IPR018108 -
Vian9g00562 377 Pfam Mitochondrial carrier protein 164 256 IPR018108 -
Vian9g00562 377 Pfam Mitochondrial carrier protein 74 148 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00562 Vian-Chr9 6510577 6515017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00562 16 372 EF-hand Containing Proteins AT5G51050 35.180 1.57e-62 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00562 K14684 - gmx:100814032 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00562 9 6510577 6515017 Vian9g00562 9 6510577 6515017 ECH
Vian6g01039 6 27655571 27660263 Vian9g00562 9 6510577 6515017 PCT